RNA id: TU442932


Basic Information

Item Value
RNA id TU442932
length 2086
lncRNA type read_through
GC content 0.42
exon number 2
gene id G373975
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11070122 ~ 11091105 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcaaattaaaactaaaagtctgcaataatattttgtaatattattttgtaataataatctgtCAGATTAGACAGattattactaaatattattaaaaccatctgcctaatattgCGTAGGTCGCTCTTGTGCCTCCAAAATAGCTCTGatccatcgaggcatggactcaacaagacctctgaagGTACTAGCAGGAGGTACTGCAGAGTGTTTTTATTGACCACGCTCTGGCAGTGGTATTTGAGACAGCCAAACCTGTCTTCTTGTCAACAGACCTAGTGATTTACACTGCTATGGATCTCATAGCATGGAGCACAGCCTGTAGGATTTCTGGGCTCATTGTAGGCATTATCTCACTATGGCTCAGGACCCACTGGTCTACTGTGTTAGAATTACAGCTTACACTGAGCAGAGTATCATAAGCTTTGCAGACCAGCATGTCAGTTCTTTTATACTTTGGTTTTATGCAGCACAGATCTTTGTGCAAAGGTTCATCAGCCTGTACCACTAGTGAGGCCACCGGTCTCTCTATGAGAGGCACTGAGCTCAGCCCAAGGGCTTCTGCATCTGCCACTGCATCCAGTGTGCATTCCCTGTTATTAGGTCACAACTTCAGTGTGCTCTTAAACATGCACAGAGCTCTTTAATGAAACTGGTCCATCATGGAATACCCCATTCACTTGTTTGGGCAAAATGGATAAGGCATCTGATCAGCTATGTCAGGTGGCGGATTCTCAGCCTTAATTCCAACCTGCATCTcattcactgctgctgctgagccACAACCAACTCCCAGAGTGTGTGCTATCAGGGCTTTCAGCCCAAGTGTGCCTCAAGTTTAGCGAATTAAACTGAACCACTGGAAATAGAGTCTGTTGCTGTATGTGAGGAAGCTGTACTGTACTTCGTCTGAGCCCACTCTTCTTTAGGCTGCTGCGTTACCACTAACAGCTCTTGCATTTGGTCAGGGTCTGTTCCCAGCTCCACTGCAATTCACTCTTACATTTCCATGGGGGCTGAGCAGCCAAGCCTTCTACCCATTTCTGTTTCTGCTGCAATACCACAGGAAAGCAGCTTATTTTTGTATTGCTAGAAGGCTCTGTAGCAGTTTCTGCTGCTTGCTTCACTCCCTGTAGCAGTATGCAGCATCAAAGGAAGGTAATGGGTAGTCAGCAGCATTTCCATAGCATGAGAGGTGTTCCTCACATGTCACCATCAGCATTATGCTGCAGTTAGAGGAAGAATGTGAAGGTGCTTGTCAAGCTGGTCCCAAATAATTTGAGCAATTATCATATCCATCATCCAACTCCATTGGGCCTGGCATCCTGCCCTGAAACGAAGTTGGAAAAGTCCACGAAGTATGGTAAATTATCAAATCCTTGGCAAAACCAATAAAGAGTGATGTAGCATGGACCTTTTGTACTATTTCCATTTGATGGTCACGAGGAGATGACTTTGCTACTTGGATGGGAAACAGGAACATGGGGATAGTCCACTAGTTCAGAAGGAGAACACCTGATGGTTCTGAATGAATGATTTGTATACTTTTTTGGTGATAGGAAACATTTCATTAACAAGGCATTTCACCAGAATACACTAAAAGTGATTTTGGTcccaacattttttaaattgcaagatGTTATTCATGAATGAGACACAAAGGCAAATTGGCATTAACAGAAAGTGATTGAAGTCCTgatttttttgctaaaataCTGAGTGCATGAATACCCATATAATGCATGTTGATAAGTGATATGGTAGAGTGGCCCTGTATGATTAAGCCTTTGGATTTTTGCATGATTATgccattcctttttttaaatagttaaaacaGCACcaattaatgaaataaactcTAGTACAGTTTGGTTAGTGAAAATTACAATGTTAATATCAAGTAGTGATTGCGTGGTTGCGTGCCACATTGCCCCACAACCTCACAGTGCTCATGGTGCTCTGATCTGGTTATCCTGCCTTCTTTTAGGTTTTCTGCTTGTGTATTTAAATAGCACGTGGACTGGGCGTTGTGCCTTGTTCTCtcattgtttttgctgtttcttGCTCTTTCAAAGTAACATACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442930 lncRNA upstream 6087 11062016 ~ 11064035 (+) False LOC113537724
TU442882 lncRNA upstream 104967 10961739 ~ 10965155 (+) True G373939
TU442877 lncRNA upstream 118642 10948931 ~ 10951480 (+) True G373934
TU442861 lncRNA upstream 136319 10929744 ~ 10933803 (+) True LOC113537644
XR_004577352.1 lncRNA upstream 137803 10930729 ~ 10932319 (+) False LOC113537644
TU442943 lncRNA downstream 44448 11135553 ~ 11135936 (+) True G373982
TU442959 lncRNA downstream 188711 11279816 ~ 11280114 (+) True G373997
TU443267 lncRNA downstream 317150 11408255 ~ 11409661 (+) True G374262
TU443302 lncRNA downstream 381594 11472699 ~ 11472973 (+) True G374293
TU443305 lncRNA downstream 404000 11495105 ~ 11495467 (+) True G374296
XM_034300343.1 mRNA upstream 2120 11062304 ~ 11068002 (+) True LOC113537724
XM_026932291.2 mRNA upstream 10624 11053094 ~ 11059498 (+) True serhl
XM_034300387.1 mRNA upstream 68444 10996925 ~ 11001678 (+) False c26h19orf67
XM_034300174.1 mRNA downstream 6226 11097331 ~ 11129514 (+) False atf7ip
XM_026931813.2 mRNA downstream 8342 11099447 ~ 11129514 (+) False atf7ip
XM_026931814.2 mRNA downstream 14914 11106019 ~ 11129514 (+) False atf7ip
XM_034300176.1 mRNA downstream 14941 11106046 ~ 11129514 (+) False atf7ip
XM_034300177.1 mRNA downstream 20861 11111966 ~ 11129514 (+) False atf7ip
TU442901 other upstream 60502 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 1193569 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 2916267 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 4351296 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 5862391 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 2925418 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 2932145 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 3988635 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 4023367 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 4258149 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile