RNA id: XM_026931814.2


Basic Information

Item Value
RNA id XM_026931814.2
length 3440
RNA type mRNA
GC content 0.52
exon number 15
gene id atf7ip
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11084542 ~ 11129515 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTATATATAGGGTGAGCAAGAGGAAGGCTAGTCGCACTCGCATTCTTGTTCATGGCCTACGTCTGAAGCTCACAGGTTCCTGTAAAATCTTGTGGGCAAATCCCTCCATGAACAGGGAGGTACAGAGGAACACAGCGATCAGTTTAACCAGGTGAAAAAATGGAAGTTGCCGTTCCAGAAGAGCCTCAGAAGAAGATTTTCCGCGCTcgaaaaaccatgaagatgagCGACCGTCAGCAGCTGGAGGTGCTGCACAACACCTTGGTGACTACAAACCCCAACTCATCTTCCTCACGGCCCCAGACACCGCTGGTAAACGGAACGCATGCGGAGGATGGACAGAAGGGGAAAGAGAAGGACAAGGAGTCTGGGACAAAGTCTCCTGCCTCGCCCTTGTCACGTTCTTCCCCTGTACCATCGCGCACGGTCTTGCTCTCACGATCGCCCTCTCCGGCTGTCAGCGAAAATCGAAACCCCTCACCTTCTCCGTCTCTGAAGAAAGGCTCAGAGAAGGGTAAAggtgaagagaaaaaaggagagaaagacaggaaggatGATAAGAAGGCTGAAGAAGTTAAAGCTGACAAGATAGAAACTACCAAATCTGCACGCACCGGTTCTCCATCAGTGTCTGACAAGAAGGCAGAGCAGAAAAAGACTTCCACAGACCAAGTGTTGAACGGCGAGCTGCCCATGGATACAGACAGCACTTCCCTTGACAACGGTTTAGCGGAGGAGAAAAGCAGTAAGAGCATCTCCTCCTCGTCTCCTTCCGGTTCTCCGGCCGCCAGCCTGGAGTGTGATCCGGAAGTGAAAGAGGGCTTTCTCTGCCTCAGTGAGGAAGATGAGGGTCAGGGAGTTCAAGATGAGGCGAAAGACAGAAACGAGGAGAAGATGGATGTGGATCctgagaaagaggagaagaaagagggagagaaagggtgTAATGTGGCAGATGGCACAGGCACCAGCACTCCTTCTGGTAAAAAGAGATCCTTGTCACCAGTAGAGGggaaagatggatggaaagatggagagattaaagaggagagagatggaaagagagcaAGGGTGGAGGGAGTGCAGTTGGAAGCTCAACTGGAGCTAAAGATCACGGCCAACGCAGGGAGCCGTCTGAAACTGGaaaaggtgGTGCAGCAGTTGGTGGAGGAGCGCTTGCGTGTGCTGCAGCTGACTGTGTTCGACCGCAGTCTACAAGAGCTGAAGGACAGAATGGAGAAGATTGATGCTGCCACCAAACAACAGAAAACTGTCCAACACACCCTACAGAGTAAGATTGCACGACTTACCAAGAAGTTTGGAGCTGCTAACCAGGCATCTGAGAATTCCAAAAAAGCTCAAGAGGCTGCTGCTGCTAAGCCTACTCCTACACCCACTACAACCCCAACAACTCAACGcactaTAAGGACCACGCTGGACCCAAAGCCGTCCAATCCTTCTGCAGCATCATCCAGTTCTACTGCTACCCCAACTCAGCCCAAACCTCACTCCACTCCAAGTACACCGACGTCCTCGGCACTGGCCGCCCCTGCACCCATCCTTCAGCTCATAACCACGACGACAAACTCCACACcgtcctcctccagctcctctctGAGTGGCCAGGCCCAGGCAGGCACTCTACTGCTGCAGCCCCGTCCAAACACGGGTGCCATGACGACTAGCACGGCCACAACAGCTGGCCAACCGATGTCCATCCAGCCTTTGCTGATCCAGCTACCACTGGCTATGGCTAATGGCCAGGGTGGGGCCATAGCTGGGGGAGTTGGCCTGATTCCCGTGTCCTCCTTGGCCACGGTTAACAGCCTTAGCAAGGCCAAGACCACAACAGCAACCACTTTTATCTTGCAGAAGACAGCGGGAAGCGTTGCGACCTCATCTTCGTCTGCTCCCTCTTCCTTGGCCTCATCCGTGTCTTCGGCAGTGGCACAGATGCCACCAAGTAGACCAGTGTACCAGGGTGGCACGGGCACAGCGAGTTCACCAAATGCTGGCATCTCTGTGACAACGGCCCGTGCCCCAACACAGTGTGCCGCCGTAGTCGGAATGGCCACTGCTTCATCGTCCCCGGCGGCCACAGGCCCTGCTGCAACAGGCTCGGCAGCGGCCGCAGCTGGTCCACCATCAGCTTCTGAAATGGCATCCAAAACAGATAATCAAGCCACTCATTCTGCTCCAGCCAAATCATCTGCTCAGCCTGCTCGTCCCAAGGGCTCAGTCATTGACCTAactgaggatgatgatgatgtccaAGTTACTGGCGTGCAGAAGGCTACTGCTCCTGCCATTCCCACCAATACCCAGCGACCCCCAGGGCCTCCCCCATCACTAGTGAGCTCCACCTCTGTTGcaggtcGTTCTGCAACACAGCATCGACCCTCAGTGGACTCGCCCTCTAAATCACGCACAAGCTCTTCATCCTCGGCTTCTCTTCCTCCATTGCCGTTAGCCCCGGCCCCACCAGCTCGTCTGCCCCCAGAGGCAGTGCACACGTCTCCACCTCAGCAGCCTCAGCTGAAGCTCGCACGTGTGCAGAGTCAGAACGGCATTGTCCTGTCGTGGTGCGTGTCTGAGACGGAGCGTAACTGTGCACCAGTGGACAGCTACCACCTCTATGCCTACCACCAGGACCAGCAGAGTACGGCAGGATCGTCCACACAATCGCCCACACACTCGCTGTGGAAGAAGATCGGTGAAGTGAAGGCACTGCCACTACCCATGGCCTGCACTCTCACCCAGTTTGTGTCCGGTTCTACGTATTACTTTGCCGTCAGGGCCAAAGACGTGTTTGGCCGCTTTGGGCCGTTCTGTGAGCCCCAGTGTACCGATGTCATCAACCCACAGTCCTAAGTTGATGTAATGAATTGTTAGTTAGCAAAGGAAAAAATGTGGTGTAGTCGGCAGAAATATCCAAACTGTGGGAGAGACTGAACTGCTAATGATGCGTCAGACTACTTGTTTAGTTAGGAAATATCCCCAAAATTGGATAGGATGTTCAAAATAGACACACATACTCTGCAGAAACACAGACTTGCACACTAGTCAGTAATTTGACGCTATTTTAAGGAAAATGGGGACTTGGCACCGGTCTGAATTGTGCCGCAAACGGTATTTTCCATGTGTAGAATGACTGTACAGGTAAGTGTTGAACCAATAGGTCAGATATTTATACATTGTGTTTGGTCTGTTCcaaatttttcatttctctttttttttttaaagaatgttttttaataaaatgaccTTCAATCCATTGCACATATGCTCCATAAAACAGCATGGTATCAAGCTACATGGAAAGACAATGGTGGCATTATTGCTTTTGTAATGTTCTGTCTGGTAACCAGACGCCCAAAGAACAGCCTTCAAATAAAGgtatttaaaatggaaaaaaaaatccctgtcacatgaatatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442932 lncRNA upstream 14914 11070122 ~ 11091105 (+) True G373975
TU442930 lncRNA upstream 41984 11062016 ~ 11064035 (+) False LOC113537724
TU442882 lncRNA upstream 140864 10961739 ~ 10965155 (+) True G373939
TU442877 lncRNA upstream 154539 10948931 ~ 10951480 (+) True G373934
XR_004577352.1 lncRNA upstream 173700 10930729 ~ 10932319 (+) False LOC113537644
TU442943 lncRNA downstream 6039 11135553 ~ 11135936 (+) True G373982
TU442959 lncRNA downstream 150302 11279816 ~ 11280114 (+) True G373997
TU443267 lncRNA downstream 278741 11408255 ~ 11409661 (+) True G374262
TU443302 lncRNA downstream 343185 11472699 ~ 11472973 (+) True G374293
TU443305 lncRNA downstream 365591 11495105 ~ 11495467 (+) True G374296
XM_026932256.2 mRNA upstream 26330 11068009 ~ 11079689 (+) False sept3
XM_026932257.2 mRNA upstream 26330 11068802 ~ 11079689 (+) False sept3
XM_026932258.2 mRNA upstream 26330 11071244 ~ 11079689 (+) True sept3
XM_034300343.1 mRNA upstream 38017 11062304 ~ 11068002 (+) True LOC113537724
XM_026932291.2 mRNA upstream 46521 11053094 ~ 11059498 (+) True serhl
XM_034300349.1 mRNA downstream 9875 11139389 ~ 11241579 (+) False grin2bb
XM_026932271.2 mRNA downstream 9875 11139389 ~ 11241579 (+) True grin2bb
XM_026932273.2 mRNA downstream 17272 11146786 ~ 11241579 (+) False grin2bb
XM_026932272.2 mRNA downstream 17285 11146799 ~ 11241579 (+) False grin2bb
XM_026932274.2 mRNA downstream 17326 11146840 ~ 11241579 (+) False grin2bb
TU442901 other upstream 96399 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 1229466 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 2952164 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 4387193 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 5898288 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 2887009 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 2893736 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 3950226 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 3984958 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 4219740 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile