RNA id: TU443305


Basic Information

Item Value
RNA id TU443305
length 343
lncRNA type intronic
GC content 0.36
exon number 2
gene id G374296
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11495105 ~ 11495467 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttattcctcttaaacggCAGCAGTTTGCCGAGAATAccaatttttaatgtattaaagaaagacatgctgtatatttgtgtaatgtttacagttacatttgatgatggtgatcatccatgaaacaagttagttcctgttatcactttgaCATTagagcagttataaacagtcatgccttcatcagcttctctttttttcctctctctgttgaaACTGATGAGACAAAAAACAATGCATATTATGTTTCCAACAAACTGGAAAGTTGTTCAggaggaaaacttactgactgttactccctcCATATGTGTTACATAGACGTCTCCGTACAGACAACTTCACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443302 lncRNA upstream 22132 11472699 ~ 11472973 (+) True G374293
TU443267 lncRNA upstream 85444 11408255 ~ 11409661 (+) True G374262
TU442959 lncRNA upstream 214991 11279816 ~ 11280114 (+) True G373997
TU442943 lncRNA upstream 359169 11135553 ~ 11135936 (+) True G373982
TU442932 lncRNA upstream 404000 11070122 ~ 11091105 (+) True G373975
TU443308 lncRNA downstream 18884 11514351 ~ 11515525 (+) True G374299
TU443254 lncRNA downstream 98498 11593965 ~ 11594922 (+) True G374251
TU443400 lncRNA downstream 104890 11600357 ~ 11600564 (+) True G374377
TU443414 lncRNA downstream 171732 11667199 ~ 11667626 (+) True G374389
TU443433 lncRNA downstream 194042 11689509 ~ 11690762 (+) True LOC117596158
XM_026932351.2 mRNA upstream 60504 11428714 ~ 11434601 (+) True LOC113537723
XM_026932102.2 mRNA upstream 72353 11419881 ~ 11422752 (+) True LOC113537560
XM_034300380.1 mRNA upstream 78688 11411046 ~ 11416417 (+) True LOC117596185
XM_026932017.2 mRNA upstream 97725 11393730 ~ 11397380 (+) False LOC113537508
XM_026931798.2 mRNA downstream 57682 11553149 ~ 11560254 (+) True cpb2
XM_034300173.1 mRNA downstream 66541 11562008 ~ 11577797 (+) True zc3h13
XM_026931960.2 mRNA downstream 82957 11578424 ~ 11593890 (+) True tm9sf2
XM_026932049.2 mRNA downstream 121108 11616575 ~ 11619225 (+) True zic2b
XM_034300197.1 mRNA downstream 125167 11620634 ~ 11666633 (+) True pcca
TU442901 other upstream 485485 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 1618552 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 3341250 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 4776279 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 6287374 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 2521056 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 2527783 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 3584273 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 3619005 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 3853787 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile