tm9sf2 (tm9sf2,LOC107654273,LOC107719731,LOC107556717,LOC107705039)


Basic Information

Item Value
gene id tm9sf2
gene name tm9sf2,LOC107654273,LOC107719731,LOC107556717,LOC107705039
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11578424 ~ 11593890 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931960.2
GGAGAAAAAGTAAAGCAACCGTCGAACTAGAAAAAGTGGGTTACGCAGGCAGGCAGATCCGCTCTGCTCCAACTGACCTGCGCGAGCCGACCACACATGAGCTATTTCTGATATCggcgttgtgttttattttgttttgcacGTACTACACCGCTGAATGAAGTGTTAGCTCGTCGACTGAGGCgtgatgatggtgtttttgCGAGTCCGTTTGGCGGTGATGTCCGCGTTTCTGTGCGCTGCTCCGCTGCTCCTCGTACAGGATGCTGCGGCTTTCTATCTTCCGGGTTTGGCTCCGGTCAGCTTCTGTGAAAAGCCTCAAGACGGAAAAGACGCTCAGAGGGAATGCCAGGACAAAATCGAGGTCTTTGTGAACAGATTGGATTCAGTGGAGTCGGTTTTGCCGTACGAATACACAGCGTTTGACTTCTGCACCGTTGAGGCTGAGAAGCGGCCGTCGGAAAACTTAGGCCAGGTGCTTTTCGGAGAGAGAATTGAGCCATCGCCTTATAAGTTTTCCTTCAAGCAAAAAGAGACGTGTAAGCATGTGTGCACCAAGAAGTACAGCACCAGTAAAGCAGAGGACAAAGCCAACCTGGATTTCCTCAAGAAAGGCATGCTCCTTAACTACCAGCATCACTGGATTGTGGACAACATGCCCGTGACGTGGTGCTACGATGTGGAGGACAATCAGAAATTCTGTAATCCCGGCTTCCCCATCGGCTGCTACGTCACGGAAACCGGCTTGGCCAAAGACGCATGCGTCGTCAACTCGGAGTTCAGTGACAAAGACAGCTTCTATATCTTCAACCATGTGGACATCACTATTTATTACCACAACGTGGAGAACGAGGCCCCTGACTCCAGACTGGTCGCTGCCAAGATGGAGCCAAAGAGTTATAAACAGAACAATCCGGATGCTCCAGACTGCACAGGGCCGCCCATGAGCCTCAGCAACAAATTAAATGGAGATATCGTCGTCCCCTACACCTACAGTGTACAGTTCAAGGAGGATCCGAACATCCGATGGGCCTCTCGGTGGGACTATATtctggagtccatgcctcacaCCAACATCCAGTGGTTTAGTATAATGAACTCCCTGGTCATCGTCCTCTTCCTGTCCGGTATGGTGGCTATGATCATGTTGCGCACACTGCACAAAGACATCGCCCGCTACAACCAGATGGACTCTGTGGAGGATGCTCAGGAGGAGTTTGGCTGGAAGCTGGTGCACGGTGACGTGTTTCGGCCACCCCGTAAAGGAATGCTGCTCTCTGTTTTCCTCGGGTCCGGCACGCAGATCTTTATCATGACGTTCGTCACTCTCTttttTGCGTGTCTGGGCTTCCTGTCCCCGGCTAACCGTGGCGCTCTGATGACGTGTGCAGTGGTGCTGTGGGTGCTGCTTGGAACTCCGGCTGGTTACATCGCTGCCCGATTCTACAAGTCGTTTGGAGGAGAGAAGTGGAAGACCAATGTGCTGCTGACAGCATTCCTCTGCCCCGGTGTTGTGTTTGCTGATTTCTTCCTGATGAATCTGATTCTGTGGGGTGAGGGCTCGTCAGCCGCCATGCCCTTCGGCACACTGGTGGCCATCTTGGCTCTGTGGTTCTGCATCTCCGTCCCTCTCACCTTCGTTGGAGCCTACTTTGGCTTTAAGAAAGCTGGCATCGAACACCCTGTGCGCACCAATCAGATCCCTCGGCAGATTCCAGAACAGTCTTTTTACACCAAACCCCTCCCAGGCATCGTGATGGGTGGGATCCTGCCCTTCGGATGCATCTTCATCCAGCTGTTCTTCATCCTCAACAGCATCTGGTCCCATCAAATGTACTACATGTTCGGCTTCCTCTTCCTCGTCTTCATCATCCTGGTGATCACTTGCTCTGAGGCCACCATCCTGCTCTGTTACTTCCACCTGTGTGCTGAGGACTACCACTGGCAGTGGCGCTCGTTCCTTACCAGCGGTTTCACAGCTGCGTATTTCCTCGTCTATGCTGTGCACTACTTCTTCTCCAAGCTGCAGATCACCGGCCTGGCCAGCACCATCCTTTACTTCGGCTACACCATGATCATGGCCTTGatcttcttcctcttcacagGAACGATTGGATTCTTTGCCTGTTTCTGGTTTGTGACGAAAATCTACAGCGTGGTGAAGGTGGACTGaatttgaccaatcagagcctGGACTCAACTCTCCTCCGCTAAATGGGATGTCTTTGGGGGAGGGATAAAAGCGCTGTCAAAGACGCCCTGTTGCCCCAGCTAACTAACAACTCAAAATAGGTTCTACAGATCTTAAGCTTCCAttggagtgtatgtgtgtaaaaaaattttgtgaaatgattttttttttttttgtgtgtgtgtgtgtatttcacacATGCTTATAAAAGAGCACTCATATAAATAGCAACATGCTGCAGCGCAGAACACACAAACCACAGCTACATTTTCCTCAACCTTAATTTCAGAttgacatttgtaaatatttttccttttcgcTAATATTAAAGTGCATCAGGTTCAGGTGTAAGTAGCTGACCTATGTTGCGGTGTTAAGTATGACTTGtaaatatgtctttttttttttttcttaaatgctGAAACATGTccggaaaaaaaagaatgcagtaAAAGAGCTGCAGCTTA

Function

symbol description
tm9sf2 Predicted to be involved in protein localization to membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human TM9SF2 (transmembrane 9 superfamily member 2).

NR:

description
PREDICTED: transmembrane 9 superfamily member 2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17086 TM9SF2_4; transmembrane 9 superfamily member 2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931960.2 True 2658 mRNA 0.49 17 11578424 11593890

Neighbor

gene id symbol gene type direction distance location
zc3h13 zc3h13,LOC107654272 coding upstream 627 11562008 ~ 11577797 (+)
cpb2 cpb2 coding upstream 18170 11553149 ~ 11560254 (+)
raph1b raph1b,LOC108258483,LOC108435976,LOC107707841,LOC107654246,LOC107588825,LOC107556694,LOC107719733 coding upstream 39046 11474102 ~ 11539378 (+)
LOC113537723 NA coding upstream 143823 11428714 ~ 11434601 (+)
LOC113537560 NA coding upstream 155672 11419881 ~ 11422752 (+)
zic2b LOC108258495 coding downstream 22685 11616575 ~ 11619225 (+)
pcca pcca,LOC107707835,LOC106594657 coding downstream 26744 11620634 ~ 11666633 (+)
c26h3orf70 c26h3orf70,cunh3orf70 coding downstream 135655 11729545 ~ 11755116 (+)
tmem41ab tmem41a,tmem41ab,LOC107588818,LOC107556698,LOC107732701,LOC107704344 coding downstream 283270 11877160 ~ 11886338 (+)
gpr183b LOC108259007 coding downstream 379015 11972905 ~ 11976873 (+)
G374299 NA non-coding upstream 62899 11514351 ~ 11515525 (+)
G374296 NA non-coding upstream 82957 11495105 ~ 11495467 (+)
G374293 NA non-coding upstream 105451 11472699 ~ 11472973 (+)
G374262 NA non-coding upstream 168763 11408255 ~ 11409661 (+)
G373997 NA non-coding upstream 298310 11279816 ~ 11280114 (+)
G374251 NA non-coding downstream 75 11593965 ~ 11594922 (+)
G374377 NA non-coding downstream 6467 11600357 ~ 11600564 (+)
G374389 NA non-coding downstream 73309 11667199 ~ 11667626 (+)
LOC117596158 NA non-coding downstream 95619 11689509 ~ 11690762 (+)
LOC117596172 NA non-coding downstream 115334 11709224 ~ 11717442 (+)
LOC113537724 sept3 other upstream 510422 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 568804 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 1318893 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 1701871 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 3108210 8465708 ~ 8470214 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 515681 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 2422633 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 2429360 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 2764852 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 3485797 15079687 ~ 15099905 (+)

Expression


Co-expression Network