G374296


Basic Information

Item Value
gene id G374296
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11495105 ~ 11495467 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU443305
ttttattcctcttaaacggCAGCAGTTTGCCGAGAATAccaatttttaatgtattaaagaaagacatgctgtatatttgtgtaatgtttacagttacatttgatgatggtgatcatccatgaaacaagttagttcctgttatcactttgaCATTagagcagttataaacagtcatgccttcatcagcttctctttttttcctctctctgttgaaACTGATGAGACAAAAAACAATGCATATTATGTTTCCAACAAACTGGAAAGTTGTTCAggaggaaaacttactgactgttactccctcCATATGTGTTACATAGACGTCTCCGTACAGACAACTTCACCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU443305 True 343 lncRNA 0.36 2 11495105 11495467

Neighbor

gene id symbol gene type direction distance location
LOC113537723 NA coding upstream 60504 11428714 ~ 11434601 (+)
LOC113537560 NA coding upstream 72353 11419881 ~ 11422752 (+)
LOC117596185 LOC108258488,LOC108258487 coding upstream 78688 11411046 ~ 11416417 (+)
LOC113537508 psmb8,psmb8a,LOC108258500,LOC108258501,LOC107694758,LOC107549856,LOC107554342 coding upstream 97725 11393666 ~ 11397380 (+)
ddx39aa ddx39,ddx39b,ddx39ab,LOC100304672,LOC107708265,LOC100706537,LOC108428188,LOC107563747 coding upstream 134659 11354135 ~ 11360446 (+)
cpb2 cpb2 coding downstream 57682 11553149 ~ 11560254 (+)
zc3h13 zc3h13,LOC107654272 coding downstream 66541 11562008 ~ 11577797 (+)
tm9sf2 tm9sf2,LOC107654273,LOC107719731,LOC107556717,LOC107705039 coding downstream 82957 11578424 ~ 11593890 (+)
zic2b LOC108258495 coding downstream 121108 11616575 ~ 11619225 (+)
pcca pcca,LOC107707835,LOC106594657 coding downstream 125167 11620634 ~ 11666633 (+)
G374293 NA non-coding upstream 22132 11472699 ~ 11472973 (+)
G374262 NA non-coding upstream 85444 11408255 ~ 11409661 (+)
G373997 NA non-coding upstream 214991 11279816 ~ 11280114 (+)
G373982 NA non-coding upstream 359169 11135553 ~ 11135936 (+)
G373975 NA non-coding upstream 404000 11070122 ~ 11091105 (+)
G374299 NA non-coding downstream 18884 11514351 ~ 11515525 (+)
G374251 NA non-coding downstream 98498 11593965 ~ 11594922 (+)
G374377 NA non-coding downstream 104890 11600357 ~ 11600564 (+)
G374389 NA non-coding downstream 171732 11667199 ~ 11667626 (+)
LOC117596158 NA non-coding downstream 194042 11689509 ~ 11690762 (+)
LOC113537724 sept3 other upstream 427103 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 485485 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 1235574 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 1618552 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 3024891 8465708 ~ 8470214 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 614104 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 2521056 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 2527783 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 2863275 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 3584220 15079687 ~ 15099905 (+)

Expression


Co-expression Network