zc3h13 (zc3h13,LOC107654272)


Basic Information

Item Value
gene id zc3h13
gene name zc3h13,LOC107654272
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11562008 ~ 11577797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300173.1
ATTTCTATTTTACACCCTACCTAGGGCACCTCTATGTTCAATAGACAGCCGTTTGGGATGCGGCCTTAGAGATTGCGGAGTCTCGCTACCTAGCATCATGAAGGCGGCTTGGCGAGCCCCGTTTAACGACCTGCGATATTTTTACTGTGTGTAATAAGAATACAAAATTCACAACAGTTTATGAAACTGGACGCGGTGCTTAACTAAACATTTcgCCCTGCAGAATGTCCAAGATCAGGCGGAAGGTGACAGTGGAAAACTCGAAGACCATATCAGAGAGCAGCAGCAGTACGACCACTCCATCCCGCAGGCCCAGCGTCTTCGAGAGACTCGGACCCAGCACGGGCAGTAATGCCACAGAGACACAGTGTAGAAATTGGTTGAAGACAGGAAATTGCAGTTACGGCAACACTTGTCGCTACACGCATGGAACTCCAGCAAGAGGCAAGAATTTTTCTGGAGCATTCAGCAGatcatCCGAGAGGCCCACTGGTGATCTCCGGGAGAGGATGAAAAATAAGAGACAGGATGTAGATACAGACACTCAGAAAAGAGACCAAGACGAACCTACTTCACCCACAACTAGACAGAGAGATTCATCTCGaagcagacacagagagaaagaggataTAAAGATCACTAAAGAACGAACGCCAGCCAGCGAAGAGGAAGCAGCAGAGTGGGAAGCCAATCGCGAAGACTCTGATAACGGTGACTACGATTACGAGTTATCCCTGGAAATGAAGAGGCAGAAGATCCAGAATGAGCTGATGAAGCTCGAGCAGGAGAACATGGACAAACGAGAAGAGCTCCTCATTAAGAAGGAGGAATCAGTGACCAAGACCAGGACCAGCAGCACCTCTAAAGATAAGGGGTCTCCCGATCACTCCAGCTCCAAGAATTCACCCCTGTCCCGCAAGTCCAGCGGCTCCCCCAAAAGAAAACCCAGTGGTTCTCCTAAACGCAAGTCCATTGGAAAAGGCAGCAACTCCGGCAAGAAGGAGAAGAAATCGTCCTCTTCTTCAGTCATCTCCTCCCCGGTGGTGGAGCAGAGCAGAACAGAGGAGGCTGAGAGCAGATCATCCAAGAGTGGACACAGCAAGAAGAAAGGGCCGCGCACGCCCAGCCCCCCTCCCCCTGTGCCCTTGGACTTGCCCGTAGGGGGCAAAAAGCACAAGGGCAAACACAAGAACAAGGAGAAGAGTGAAGACAAGCAGAAAGAGGCCAAGGAGCGGGGCAGGGACATTGATAAGCacaaggagaagaaagagaagcgCAGGGACCGCTCCGACAGTTCCCACAAGGCTAAGCGATCAGTGACGTCAGAAGAACGTTCTGGAAGTGTGTCGTCTCCGGGGCGAGAAGTGTCGCCCCAGACCAGGAGGAAGTCCTCATCCCCCAAGCCTGCCACCCAAAAACAAAGTTCACCTCAGAGGTCGCGTACCCCACCACGTCACCACCGGAGCCCCTCTCCTACGCCCCGCCCTCACCACTCCCCCTCATCTCACTCTGGGTCTTCCCACCAGCGTCACTCTCCATCTCCTCGCAGACGCCGCAGCTCCGTCTCCCCATCCTACCAACGGGACCTGCTTCCCCCCTTGTCATCTTCACCCACAGCTGCTCAGGCCTCACGCCGCTCGCGTTCCCGTTCGCCCCCCACGCCGCAGAGGTCAAGCCCCTCCTCCCGCCACCACTCACAGGGCCGGGAgcgggaaaaagagagaggacggggggagagggagagaagccCTGGCCATGACAGACGTCATGAACGCAGAGATGAGAGCCGCGGGAAGCGTGAGAAAGACAGTGGGCGGGACGATCGCAGCTATGAGGCTGATCAGAGCTCCTCACGAGATGAACGTGAGACCCGAGAGAGCCGTGACCGAGACCGGCGCTTCGATCGAGACCGACGAGACACACGCGATGATCGACAACACCGCAGCAGTGATGCCAAGGACTTGCGGGACACCAGAGACCGCTCTGGCCGCGAGTCAatggaacacagagagagagaccgggagagggaaagggacagagagagagagagggacagagataGGGAAAGGACTGATGCTCACAGGAAAGATGATGCATCAGTGCAGGAAGAGAGAAGTTACGGAAGAGGACATAGCAGAGAAGAGGGGCGGAGTGAGAGCAGGGCGGAGAGCAGGAGCGAATCGCGTGCAGAGAGGATGGGAAGAGGACGGGGACGTGCATCAGACAACCCTGAAAAAGGATCAGCTCGTGGGTCTCGTACATCACAGGCAGACAGTGGGGGCCATGATGGATGGGAGTCTCGTAGCAGTGGCTTAAGAGAAAGGAGCtctgagagaaacacagaaaggGGGACAGAACGTGATCGCTATGACAGCGACAGGCAGCGTGGAGACCAGGCCCGAGATTCGTCTTATGACCGCCGTGGAAGTCAGGCAGACAGAGATCGCCGCGACCACAGGGACAGAGATCAGAGAGCACCCTCACCAGGTCGCCACCAAGGCCGCAGTGAAGACACGGAGcgtgaggagaggagagacgAGAGGAGGAGCGACCGAGGGGAGGACAGACGAGAGGACAGGGGCCGTGAGCGAGAGGGCCGCgagcgagacagagaaagggacagggaaagagagagggagcgggaaagagagaaagagagggagagagaggccgagagggaaagggagaggGCCAGGGAGAGAGAACGTGAGAGAGAGCGGGAGCGAGAAAGGGagagggaggaaagagagagggaagagagggaacgcGAGAGAGAAGAGCGGGAGCGGGAGAGGGAAcgggagaggaaggagagagaacgGGAGAGAGAGCTCCGAGAGAGGGAAAGGCAGAGAGaatgggaagagagagagaaaggcagggAGGAGAGgcgggagaggagagaggaggcaCGAGACGAACGTTCGGCCAGAGATACTCATGAAGAGCGAAAGAACAGTGGGCGCAAGAGGCACCGTGTGGAGAACACTCCCAGCCCCCGGCCCTCTCCTAAAAAAGTGCGGGAAGGTAGCCCTGCAGACAGTGATGGCTACAACAGTACAGAGGAAAAAGGTGATAAACACAGACTCCTGAGTCAGGTCGTCCGTCCTCAGGAGCCAAGCCGCTCCCCTCCCCGCGTATCCACTGATGAGAAGCCCACGCGCTGGAGGGACAGTGAACGTCGCGGTGACAAGAAGGATGGGCGTGGTCGGCACGAAGAGGCAGAACCTCGTAGTGAGCGAGGTGCAGGTCGAGGGTTGGAGCGGCGTGGGGATCATTCTTCTGAGAGTTCTCTGAATATGCCAGCATCTGAGACTCGAAGGGGTAAAGAGCAGAGAGATGCTATCACACCACCTGCCCCCTCGGCTGGTGGCACTGAGGCTCGAGATTCTGCATCGGCCGGGCATGAGGAAGgcaagaagaaaacaaagtCTCAGAAAAAGAAcctgaagaaaaacaggaaagaggATGAGAGCACTAGCACTGGTGGTGACCGTTTTAACCCTGAGCCCCCGCCACCTTCTTCCTCCTCAGTACCCTCTGAAGCTCCACGCCCACTTCTCTCGCCTCCTAAGATGGTCAAGAAGAAATCAATGGAGCGGAGGCGGAAGCGCTCCCGGGGCGCCGAGTCTGACCCATCTGAGGATGAGCAGCCCATGAGCAAGAGACGCCGCGGCCCACAGACACCTCCGCCGATCAACAAAGAGGACTTGCCTTCCCAGCGGGCGTTGATATCTGGCCATCCTATAGCAGCACCGCTCAAAATGGACACTAACTTCAGTGACTGGTCTGACGAGGAGGTCCCAGAACGCAGCGAAGCTTCATCTGAGCGAGCTCCAGAGCGGCTGCTGCCCCGCCGAAACCCACCTCTAGCCCCGCTGCTCCCTGACCCGCCTATGGTGATACATGCACTCCCGCTGCAGCCGCTGCTGCCGCAGCACATGTTGCGCAAACCACAGCAGGCCGACCAAAGGCAGCAGCGCAGTAGCAGCATGGGTAGCAACCCAAGTCGGGCAACATCGCGCCGGCTCCGTTCACCATCCAATGACTCAGCCCATCGCACAGACGACAGCCAACAGGGGCCACGATCACGCAGGGCACGTGGACAGGGCGCCAATTCCCGTGACCgcgacagagagagggacagggagagagaaagggaacgAGAGAGGGATAGGGTGGCAACCAATGAACCGATTGGAGGAAGGGAGGAGAGGAAGTCGAGGATTGACCAGTTGAGGAGAGGAGAGCCGAGTCGCAGTACTTCATCAGacCGACAGGACTCACGTAGTCACAGTTCTCGGCGCAGCTCTCCAGAGTCAGAGCGGCAAGGTCGCTCTCGGGCCGGCTCGCATGACAGCCGTGAGCGTGACCGGGACCGTGAGCGTGACCAGTTTGAGCGTGACAGGAAGGAGTACCGGCAGCCGCAGAACCAGCCAATATCACAGCAGCGTGATTGGGAGCCAGAACCCCGTGAGTGGGGTGTTCGAGGTCGCGAGCCCCTCCTTCTCCGCCCTAACCGGGAGCCAATCAGAGAGCGGGACTTGCGCGAGATGCGTGAGAGGGAGAGACTGCTGCCTGAGGGACTGCTGTCACATGAGCGCCTTGACCGCGATCGTGGCGATAGGGAGCGAGAACGGGACAGGGACCGAGACAGGGACAGGGGAGAACGTGAGCGCATGCTGCCCTTTGACCTCCCGCCATTAGAACCCAAGAGCCGAGCAGAGATGCGGATGGAGCGAGGAGACTACGAGCCCCTGCTGCCTCGAGAAGCCCTCGTGGACGTGGACAAACCCAGAGCTACAGACGAGCCACATGGACAGATGGAACCCTGTGAGACAGAGAAGATAGATAGCCTTGATGtaGAGGATGAAGGGAAGGGTGAGGATGCCCAGTCGGCAGTGTCGGGTGGGGAGGAATACGAGCCTATCAGCGATGATGAGCTGGATGAGATCTTGGCCGACAGCCAGAAAAGAGATGATCAGCAGGATGAAGAGAAAATCCCAGGACCCCTGGACGTGATTGATGTGGACTGGTCCAGCCTGATGCCCAAGCAGAAACAGGAAACCCGGGCACCAGGGGCAGCACTGCTTAGATTCACACCCGGAGCCATGCTGCTGCGGGCGGGCGTCTCTCGCCGTCTGGCTGGTCCTCAGCTCCTCGCGCGTGTTAAAGACGTCTGCGCTAAAGAGCTGGAGGATGCTAAAGATGTGGAGAAGCTGTTTGAGCACGACCTTGGTGCCCTGAACATGGCCGCCCTCAacaggaggacagagagagcgaACCTACTGAGAAACCTGGGGCCGTGTGGCAAGGCTCTCTGTGCACGTCGAGACATTGCCATCCGCAGGCAGCTCCTCAAAAATGACAAGGGGACGACTAAGCAGATCTACACCAGCGCTCCAGTGGTGGACCAAGAACTCCTGCAGCTCAGCATACGTCTGTTTAAGAAGAAAATGGCTGCCGGGCAGGAGAAAGCCGACCCGGCGCCCGTGGCTAACGCCCcagctgaggtgtgtgtgtcttgaaACTCCCCAGTGAGTACAGCACGTGGAAACTGATCACCCGGACTCGGCCATCTTGTGCtgtgaaacactgaaactgttTGTAAGTCAGTGATAATTGCGAATCAGCGACGCAGGCTTGAGAGATCAGCACCATAGAGACTGGAAAAACGCTAGCCTATGAAGATACTGTATACATTACGAAAGCCAATGAACTTTCTATTCTAAGTGTGGCAGAGAACTATTGATGAGAACTGGCTCTCATTCCAGGTAATGTTTTagagaaactgtttttttgtaatGTCAGTCATCATTTATACCGGAGttgctttgtgtttatttgctgTACTACGTATTAGAGCTGTGCATTAAAATGGTCTTTGTCA

Function

symbol description
zc3h13 Predicted to enable metal ion binding activity. Orthologous to human ZC3H13 (zinc finger CCCH-type containing 13).

NR:

description
zinc finger CCCH domain-containing protein 13-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K22909 ZC3H13; zinc finger CCCH domain-containing protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300173.1 True 5890 mRNA 0.57 23 11562008 11577797

Neighbor

gene id symbol gene type direction distance location
cpb2 cpb2 coding upstream 1754 11553149 ~ 11560254 (+)
raph1b raph1b,LOC108258483,LOC108435976,LOC107707841,LOC107654246,LOC107588825,LOC107556694,LOC107719733 coding upstream 22630 11474102 ~ 11539378 (+)
LOC113537723 NA coding upstream 127407 11428714 ~ 11434601 (+)
LOC113537560 NA coding upstream 139256 11419881 ~ 11422752 (+)
LOC117596185 LOC108258488,LOC108258487 coding upstream 145591 11411046 ~ 11416417 (+)
tm9sf2 tm9sf2,LOC107654273,LOC107719731,LOC107556717,LOC107705039 coding downstream 627 11578424 ~ 11593890 (+)
zic2b LOC108258495 coding downstream 38778 11616575 ~ 11619225 (+)
pcca pcca,LOC107707835,LOC106594657 coding downstream 42837 11620634 ~ 11666633 (+)
c26h3orf70 c26h3orf70,cunh3orf70 coding downstream 151748 11729545 ~ 11755116 (+)
tmem41ab tmem41a,tmem41ab,LOC107588818,LOC107556698,LOC107732701,LOC107704344 coding downstream 299363 11877160 ~ 11886338 (+)
G374299 NA non-coding upstream 46483 11514351 ~ 11515525 (+)
G374296 NA non-coding upstream 66541 11495105 ~ 11495467 (+)
G374293 NA non-coding upstream 89035 11472699 ~ 11472973 (+)
G374262 NA non-coding upstream 152347 11408255 ~ 11409661 (+)
G373997 NA non-coding upstream 281894 11279816 ~ 11280114 (+)
G374251 NA non-coding downstream 16168 11593965 ~ 11594922 (+)
G374377 NA non-coding downstream 22560 11600357 ~ 11600564 (+)
G374389 NA non-coding downstream 89402 11667199 ~ 11667626 (+)
LOC117596158 NA non-coding downstream 111712 11689509 ~ 11690762 (+)
LOC117596172 NA non-coding downstream 131427 11709224 ~ 11717442 (+)
LOC113537724 sept3 other upstream 494006 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 552388 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 1302477 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 1685455 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 3091794 8465708 ~ 8470214 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 531774 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 2438726 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 2445453 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 2780945 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 3501890 15079687 ~ 15099905 (+)

Expression


Co-expression Network