G374262


Basic Information

Item Value
gene id G374262
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11408255 ~ 11409661 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU443267
CTGAAGAGCATATCCTGTAGTATGTGAGCCGCCATGGTGACTCTGGGGTTCCTCTCGCTATTCAAGGAGAAAATGGTGAGGTTGGAAGAGAGCAATTCTGTAGTTTTAAAAGTGTCTGCCGCCGTCCCCGCACCGCAACAACTAAAACACATAAGAAAACTATGAATACATATATGCATTacattctgtctttctgtgcCATTTTTATCTTACCATAATAGCATAATGTTTAACAAATTAAGACATTTGTGCTGTataaagatgcatttttttattattattttgatattgTTTAACTGAATTCCAATGAGGCTGACACAATGACTACATTTACACgcacatcaaattctgtttaaggtctatattcttGATGCAGCCGTActccgaatacgatgtttatatgccttcaggcatcggaatattcctgtatacatggttgttgtaagtatgcctgagttgccattcctaaatatctagcctacagctaagcatctgttagcacccacaattccatGCGAAATGAGCAggcgcatatatctccttttagtagattttctgaataaggtgtttacatgcagcaaatttctgattaaaacagacATATTCCAGGAGTGAGAATGAGAATTTGGGGAGtaagaatattgtcttaatctgaatgtGGTGTTTACGTGACTcagtactaattagaatattgccaaattctgattaatattggaatattgatgtgcatgtaaacatagtcaATAGTGTAGTGGGTAATGTTGATGCCACACAgttccagggtctctggttctGGATCCTTagctcaggttattgtctgtgtggtgtttcacaTGTTTCACATGTCCCCgtgtctgtatgggtttcctactggttctctggtttcctcttaCCTCCACAAAACTTGCCAATAGTTGCTCTCTTCCAacaggtggactggctatgctaaactgcccccaagatgtgaatgagtgcatgaatgtgtaCTTATGATGCTGTGATGGACTTGCACCtgtgggataggctccagatccattgGATCCTCCCCACCCCCAGGTTTAATGAATTCCAGAGGTCGACTTACTATATGTTTGGAGCAATGTAGTGAATTTTGGCACACATTTTATCAGCAACTACTTCACTGGAGGTTGCCCTTGTGTCAGCTCCCAGGACCACACCATcctacaaatacacacacacacacCTTAAACACCACTCCTGCGATCGTTGTGCCAGTCTTTACAGGTTTGGGCGCCTTGCTTTTCCCCTCACCCAGAGCATTCtccaataaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU443267 True 1294 lncRNA 0.41 2 11408255 11409661

Neighbor

gene id symbol gene type direction distance location
LOC113537508 psmb8,psmb8a,LOC108258500,LOC108258501,LOC107694758,LOC107549856,LOC107554342 coding upstream 10875 11393666 ~ 11397380 (+)
ddx39aa ddx39,ddx39b,ddx39ab,LOC100304672,LOC107708265,LOC100706537,LOC108428188,LOC107563747 coding upstream 47809 11354135 ~ 11360446 (+)
LOC113537603 LOC108258484 coding upstream 113493 11284173 ~ 11294762 (+)
zgc:101679 zgc:101679,f8a1,LOC108258498,LOC108428241,LOC107551875,LOC107676892,LOC107712230 coding upstream 133813 11269535 ~ 11274442 (+)
si:ch211-243a20.4 NA coding upstream 140104 11260728 ~ 11268151 (+)
LOC117596185 LOC108258488,LOC108258487 coding downstream 1385 11411046 ~ 11416417 (+)
LOC113537560 NA coding downstream 10220 11419881 ~ 11422752 (+)
LOC113537723 NA coding downstream 19053 11428714 ~ 11434601 (+)
raph1b raph1b,LOC108258483,LOC108435976,LOC107707841,LOC107654246,LOC107588825,LOC107556694,LOC107719733 coding downstream 64441 11474102 ~ 11539378 (+)
cpb2 cpb2 coding downstream 143488 11553149 ~ 11560254 (+)
G373997 NA non-coding upstream 128141 11279816 ~ 11280114 (+)
G373982 NA non-coding upstream 272319 11135553 ~ 11135936 (+)
G373975 NA non-coding upstream 317150 11070122 ~ 11091105 (+)
G373939 LOC107692181,LOC108428230,LOC107712223,LOC107603033,LOC107676851,LOC107561874 non-coding upstream 443100 10961739 ~ 10965155 (+)
G373934 NA non-coding upstream 456775 10948931 ~ 10951480 (+)
G374293 NA non-coding downstream 63038 11472699 ~ 11472973 (+)
G374296 NA non-coding downstream 85444 11495105 ~ 11495467 (+)
G374299 NA non-coding downstream 104690 11514351 ~ 11515525 (+)
G374251 NA non-coding downstream 184304 11593965 ~ 11594922 (+)
G374377 NA non-coding downstream 190696 11600357 ~ 11600564 (+)
LOC113537724 sept3 other upstream 340253 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 398635 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 1148724 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 1531702 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 2938041 8465708 ~ 8470214 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 699910 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 2606862 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 2613589 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 2949081 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 3670026 15079687 ~ 15099905 (+)

Expression


Co-expression Network