zgc:101679 (zgc:101679,f8a1,LOC108258498,LOC108428241,LOC107551875,LOC107676892,LOC107712230)


Basic Information

Item Value
gene id zgc:101679
gene name zgc:101679,f8a1,LOC108258498,LOC108428241,LOC107551875,LOC107676892,LOC107712230
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11269535 ~ 11274442 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931712.2
gaatgcaccAGCGTGACTCGGTAGCCAATAGGAACACAGGATTTAGGAATCGTTAACTTGTAGCAACAATGGCGGCAGAGGGAGATTTTCTTACGCGTTATCGAGCAGTATCAAACAAGCTGAAGAAACGTTTTCTTAGGAAGCCTAACGTCGCAGAAGCAAGTGAGCAGTTTGGTCAGTTAGCTAAAGAGCTGAAACAACAGGACTGCCTTCAGTATGCAGCCTTCTGTAATTTGGCCATGGCTCGGTGTGAGCAGACTCTCTTCAATGCCCCAGGGGAGGCTCTGGCTCTGACTGATGCCGCCCGACTCTTTCTAGCCTCTGAGCAGGAGACTCGAGCTCTGCAAGCCCCGGGCTTTGATGAGCATCTGCAGGCTGCACTCAACTGCTACAGCTTTGCCATAAAGgtttatattgagATGAATCAGCCGGTCATGGCTGCCAGTCTCTCCCTTGAACTTGGAAAAGCGCTCAAGGAGATGAATAAGCCAGGAGAGGCTATCGTCCACTTTCAGAGAGCTGCAGAGCTTCAGTCACAGATGCCTATCGAGGCTTTGTTGTCTTTTGGAGAGATGGCTTCCTGCAAAATACTGAGCCgtgattATGACGGTGCGCTGGCTGTCCTTTCAGAAATGCAGGCCATGTGTCAGGAGAGAGGGCTGCAGCTTCCTGGCACAAACACCCCTGTCGGTGCTTTTATGGATATAGTAGCAAAGTGTGAAATCTCCAGAGTACTTCTGCTCATGTTGCTTGAGCCTCCTCCACAGAAGCTACTGCCTGAGCACGCACAGACACTAGAGAGGTATGCCTGGGAATCTTTCGACTCACACAGTCAAGTTAACTTCCTTGCAGAAGATGTCTTCCTCCTGCTGCAGTCTGTGGTGATGGCATGTCAGGAAAAAGACATTGAATCTCTCAAATCTCTCCAGACAGAACTGTGgccTCACCTCTCTGCTGAACAGAATCACCTCCTACATCTCGTCGTGCAGGAAAGAATCAGCCCCTCTGGTCAGGGGGTTTAGTTCAGACCTACATACAGCCATGTGAAATCACTCCGTGTCCACTTCCACTGCCTGGTGCATCACGTAGGGAGTCTTACAGAATGACAGTACTGAAGCTATGGTACAGTTATAACTGAATATTTGTATTACATCTTGATGACTTGTTAAAGAATACTTTATTTCTTAACGTTGACAAATGTGATGTACACACAGAACACGTCCACCACAGGACATGAATCTATATTTTGTCCTCCATTAAGTTTCATTTTGAATCATTGCActttaataattttacatttttagtatTTAAAGTTACATGAAATCTA

Function

symbol description
zgc:101679 Predicted to be involved in vesicle cytoskeletal trafficking. Predicted to be active in early endosome. Orthologous to human F8A3 (coagulation factor VIII associated 3).
f8a1 Involved in negative regulation of proteasomal protein catabolic process. Located in early endosome and nucleus.

NR:

description
PREDICTED: factor VIII intron 22 protein-like

GO: NA

KEGG:

id description
K20135 F8A; factor VIII intron 22 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931712.2 True 1327 mRNA 0.47 12 11269535 11274442

Neighbor

gene id symbol gene type direction distance location
si:ch211-243a20.4 NA coding upstream 1384 11260728 ~ 11268151 (+)
grin2bb grin2b,grin2bb,LOC108258482,LOC107676879,LOC107551907,LOC107692185,LOC107603025,LOC107712222,LOC107718709 coding upstream 27956 11139389 ~ 11241579 (+)
atf7ip atf7ip coding upstream 140020 11084542 ~ 11129515 (+)
sept3 sept3 coding upstream 189846 11068009 ~ 11079689 (+)
serhl serhl2 coding upstream 210037 11053094 ~ 11059498 (+)
LOC113537603 LOC108258484 coding downstream 9731 11284173 ~ 11294762 (+)
ddx39aa ddx39,ddx39b,ddx39ab,LOC100304672,LOC107708265,LOC100706537,LOC108428188,LOC107563747 coding downstream 79693 11354135 ~ 11360446 (+)
LOC113537508 psmb8,psmb8a,LOC108258500,LOC108258501,LOC107694758,LOC107549856,LOC107554342 coding downstream 119224 11393666 ~ 11397380 (+)
LOC117596185 LOC108258488,LOC108258487 coding downstream 136604 11411046 ~ 11416417 (+)
LOC113537560 NA coding downstream 145439 11419881 ~ 11422752 (+)
G373982 NA non-coding upstream 133599 11135553 ~ 11135936 (+)
G373975 NA non-coding upstream 178430 11070122 ~ 11091105 (+)
G373939 LOC107692181,LOC108428230,LOC107712223,LOC107603033,LOC107676851,LOC107561874 non-coding upstream 304380 10961739 ~ 10965155 (+)
G373934 NA non-coding upstream 318055 10948931 ~ 10951480 (+)
LOC113537644 NA non-coding upstream 335732 10929744 ~ 10933803 (+)
G373997 NA non-coding downstream 5374 11279816 ~ 11280114 (+)
G374262 NA non-coding downstream 133813 11408255 ~ 11409661 (+)
G374293 NA non-coding downstream 198257 11472699 ~ 11472973 (+)
G374296 NA non-coding downstream 220663 11495105 ~ 11495467 (+)
G374299 NA non-coding downstream 239909 11514351 ~ 11515525 (+)
LOC113537724 sept3 other upstream 201533 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 259915 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 1010004 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 1392982 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 2799321 8465708 ~ 8470214 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 835129 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 2742081 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 2748808 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 3084300 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 3805245 15079687 ~ 15099905 (+)

Expression


Co-expression Network