si:ch211-243a20.4


Basic Information

Item Value
gene id si:ch211-243a20.4
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11260728 ~ 11268151 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931739.2
GATTAAGAGATTAATGTCTCATGACATAGAGGCTGGAAGAAAAAAGCCCAGTGAATGTCCTCTTGCCGAATATTTTGCTTAGGGTACTTAGGTGTAAGTTTCAGAGGGTCAGTGTGAGGACGTGTGGGAAATTCTGGACTGATAACTGGGACTTGGACAACATGATGTTGACAACACCGTTTGGAGTGTTCTGgatttttctgttgtgttgcTGTAGTAAGAGTGaagccaAACTTTCTCTCAAGAGCCGAACCAGCGTGGCACTGGCAGGAAAAACAGTCATCCACCAGCTTAAAGTCACCATCCCACCTAACGGCACCAAGGACTACATTATATGTTACCAAAACATGCATCGAGTATGGCAAAAAGAGATTGAGCAAAATCCTTCTCCTAATTCAAAGATAATAGAGTTGTCACCAAATATCACCATGCATAACAGCTCAAGCTCCGGAGAATACTACTTCAGTTACAAGAGTGAGAAGCTGTATTGGGTTGTCCTTGTACGAGaTGTGGGTTATCTGCCAGATACGGAGAGTTTTATCATCCCTTTGCTGGTTGTCATCATTCTTCTGCTGCTTCTCAGCATCGCTGGATCAGTTTATATCTTCAAGTGGTACAAGAATCAGTCACTATCTGAAGGAGATGGAGATAAAGtgaaagccaaaaacagaacaaGAAATGCAGTTGCGACAGTAGAAGGAGCCACGTCTGATTCAGTGTACACGGCACTTGACCACAGGACTGTCTCCGTTTATGATGTGCTGAATGTTGATGAAGCCAGGAAAGCAAAAACAGAAAGCCAAACCTCAAATAAAAAGGCCAAGCCTTCACCAGTAGAGGAGGGGATATTTGAATCAGTATATGAAAACCtgtgattaaatattatttgtatatacagAAGATATATCTGTAAGAGATGTATAAACTCTATAAGCTTCATAAATTTTCTGCTCATCTGTACAATTGTCTGCCACTTTTTGcataaacaaagaaacataCATATTTGTACATATAGAAAGTGtcaataaaaaatgtgtaaactcTA
>XM_034300015.1
TCATAGTCACGTCCTTCTGACATTACACAGATTAGAGACTGTTTAACCACAACCAGACTGTTTGACAAGCAACCTGTGATCAGGCATTTAAGATATTTCTTGCAATTATACAGTAACTGGGACTTGGACAACATGATGTTGACAACACCGTTTGGAGTGTTCTGgatttttctgttgtgttgcTGTAGTAAGAGTGaagccaAACTTTCTCTCAAGAGCCGAACCAGCGTGGCACTGGCAGGAAAAACAGTCATCCACCAGCTTAAAGTCACCATCCCACCTAACGGCACCAAGGACTACATTATATGTTACCAAAACATGCATCGAGTATGGCAAAAAGAGATTGAGCAAAATCCTTCTCCTAATTCAAAGATAATAGAGTTGTCACCAAATATCACCATGCATAACAGCTCAAGCTCCGGAGAATACTACTTCAGTTACAAGAGTGAGAAGCTGTATTGGGTTGTCCTTGTACGAGaTGTGGGTTATCTGCCAGATACGGAGAGTTTTATCATCCCTTTGCTGGTTGTCATCATTCTTCTGCTGCTTCTCAGCATCGCTGGATCAGTTTATATCTTCAAGTGGTACAAGAATCAGTCACTATCTGAAGGAGATGGAGATAAAGtgaaagccaaaaacagaacaaGAAATGCAGTTGCGACAGTAGAAGGAGCCACGTCTGATTCAGTGTACACGGCACTTGACCACAGGACTGTCTCCGTTTATGATGTGCTGAATGTTGATGAAGCCAGGAAAGCAAAAACAGAAAGCCAAACCTCAAATAAAAAGGCCAAGCCTTCACCAGTAGAGGAGGGGATATTTGAATCAGTATATGAAAACCtgtgattaaatattatttgtatatacagAAGATATATCTGTAAGAGATGTATAAACTCTATAAGCTTCATAAATTTTCTGCTCATCTGTACAATTGTCTGCCACTTTTTGcataaacaaagaaacataCATATTTGTACATATAGAAAGTGtcaataaaaaatgtgtaaactcTA
>XM_034300016.1
CATCATAGTCACGTCCTTCTGACATTACACAGATTAGAGACTGTTTAACCACAACCAGACTGTTTGACAAGCAACCTGTGATCAGGCATTTAAGATATTTCTTGCAATTATACAGTAACTGGGACTTGGACAACATGATGTTGACAACACCGTTTGGAGTGTTCTGgatttttctgttgtgttgcTGTAGTAAGAGTGaagccaAACTTTCTCTCAAGAGCCGAACCAGCGTGGCACTGGCAGGAAAAACAGTCATCCACCAGCTTAAAGTCACCATCCCACCTAACGGCACCAAGGACTACATTATATGTTACCAAAACATGCATCGAGTATGGCAAAAAGAGATTGAGCAAAATCCTTCTCCTAATTCAAAGATAATAGAGTTGTCACCAAATATCACCATGCATAACAGCTCAAGCTCCGGAGAATACTACTTCAGTTACAAGAGTGAGAAGCTGTATTGGGTTGTCCTTGTACGAGaTGTGGGTTATCTGCCAGATACGGAGAGTTTTATCATCCCTTTGCTGGTTGTCATCATTCTTCTGCTGCTTCTCAGCATCGCTGGATCAGTTTATATCTTCAAGTGGTACAAGAATCAGTCACTATCTGAAGGAGATGGAGATAAAGtgaaagccaaaaacagaacaaGAAATGCAGTTGCGACAGTAGAAGGAGCCACGTCTGATTCAGTGTACACGGCACTTGACCACAGGACTGTCTCCGTTTATGATGTGCTGAATGTTGATGAAGCCAGGAAAGCAAAAACAGAAAGCCAAACCTCAAATAAAAAGCATGGTTTGGGTTATCTGCATTTTATAATGCAATAATTGGAGAGAGGAAATGTGGAAGGGATATAATGCATGCATGGATCATCCCACAGCAATGGCTAAATGGTGCTCTGATGGATCATGTGCATTAAATGGTGTTTTTATGGAAcatcttaataaaaataagatgtAAACTGGGGAATACACTACTTAGTATGCACAGATTTTTACTTAGTgtattgtgtttgtatttttaattttagaga

Function

GO: NA

KEGG:

id description
ko04380 Osteoclast differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931739.2 True 1045 mRNA 0.40 7 11260728 11268151
XM_034300015.1 False 1016 mRNA 0.39 6 11260902 11268151
XM_034300016.1 False 1033 mRNA 0.40 6 11260900 11267209

Neighbor

gene id symbol gene type direction distance location
grin2bb grin2b,grin2bb,LOC108258482,LOC107676879,LOC107551907,LOC107692185,LOC107603025,LOC107712222,LOC107718709 coding upstream 19149 11139389 ~ 11241579 (+)
atf7ip atf7ip coding upstream 131213 11084542 ~ 11129515 (+)
sept3 sept3 coding upstream 181039 11068009 ~ 11079689 (+)
serhl serhl2 coding upstream 201230 11053094 ~ 11059498 (+)
c26h19orf67 NA coding upstream 259050 10996738 ~ 11001678 (+)
zgc:101679 zgc:101679,f8a1,LOC108258498,LOC108428241,LOC107551875,LOC107676892,LOC107712230 coding downstream 1384 11269535 ~ 11274442 (+)
LOC113537603 LOC108258484 coding downstream 16022 11284173 ~ 11294762 (+)
ddx39aa ddx39,ddx39b,ddx39ab,LOC100304672,LOC107708265,LOC100706537,LOC108428188,LOC107563747 coding downstream 85984 11354135 ~ 11360446 (+)
LOC113537508 psmb8,psmb8a,LOC108258500,LOC108258501,LOC107694758,LOC107549856,LOC107554342 coding downstream 125515 11393666 ~ 11397380 (+)
LOC117596185 LOC108258488,LOC108258487 coding downstream 142895 11411046 ~ 11416417 (+)
G373982 NA non-coding upstream 124792 11135553 ~ 11135936 (+)
G373975 NA non-coding upstream 169623 11070122 ~ 11091105 (+)
G373939 LOC107692181,LOC108428230,LOC107712223,LOC107603033,LOC107676851,LOC107561874 non-coding upstream 295573 10961739 ~ 10965155 (+)
G373934 NA non-coding upstream 309248 10948931 ~ 10951480 (+)
LOC113537644 NA non-coding upstream 326925 10929744 ~ 10933803 (+)
G373997 NA non-coding downstream 11665 11279816 ~ 11280114 (+)
G374262 NA non-coding downstream 140104 11408255 ~ 11409661 (+)
G374293 NA non-coding downstream 204548 11472699 ~ 11472973 (+)
G374296 NA non-coding downstream 226954 11495105 ~ 11495467 (+)
G374299 NA non-coding downstream 246200 11514351 ~ 11515525 (+)
LOC113537724 sept3 other upstream 192726 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 251108 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 1001197 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 1384175 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 2790514 8465708 ~ 8470214 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 841420 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 2748372 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 2755099 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 3090591 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 3811536 15079687 ~ 15099905 (+)

Expression


Co-expression Network