serhl (serhl2)


Basic Information

Item Value
gene id serhl
gene name serhl2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11053094 ~ 11059498 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932291.2
ACCGTAACTTTGTCTGTGGGGTGATTTTACAGGTCAGATCGCCTgatttttgtgtatttctgcacggatctgtgtgtgtgttgctgaatGTCCCTGTCTGAGTCAGGACTAAAGCTTTTACTGTAGATACATCTCTTAAAgatgatGCAGACACTGAAAAATGTCAGACATTTGGCCACGGCAACGATGAAACATACAGTGACTGAGTTCAGGATGCCAGTGCCCTGGGGGGAGATGAGAGGCCGAGCCTGGGGTCCTGATCATGGGCGTCCTGTGCTCTGCCTGCACGGCTGGTCTGACAACTGCGGCTCCTTTAACACGCTCATCCCTCTGCTACCTGCTGatTGGAGGTGTGTTGCTGTAGATTTGCCTGGTCATGGCTTCTCCTCTCACAGACCTGCAGGAATTTTCTACACGTTTCCTGCTTATATCACAGACATCTGACGACGCGTCATTGAAGCTCTACAATGGAAACGCTTCTCCATAATTGGCCACAGTATGGGTGGAAATATAGGTGCAATGtTGAGTGTGTTGTATCCAGACATGGTGGAGGGATTAGTGCTCCTGGACTCCTATGGATTTCTCCCGATAGATGTgAAAAGAATGAGCATGATCATGAACAGAGGGATTGAGGAAATGATGGAGTATGAAAAAAAGTTGcctgaaaggaaagaaaggatctaCACCTATGAGGCGGCCAAAGAGAGGCTGAAGGCAGCAAATCAGTTTCTCTCAGACAAGTCATTAGAGATTCTTCTAGAGCGAGGACTCCAGAAGGTGGATGGAGgaGTGGTGTTCACCAGAGACATCAGAATAAACCTAACTAACATTGTGCGGATTACGTTGGAGCAGTGTCTACAGATGCAGTCACAGATAAAAACTAAAGTGCTCCTGCTGCGGGCGAGCCAGGGTTTGCAGAAGACCTTCCCCCAACCTGAGGAGTTAGCAGTTCCCTTACGAAAGGGCTGGTCAGGACTACGAAACACCTTCATAGAATTGGAAGCGGATCATCATGTGCATTTGAACAACCCTGAGCTCGTGGCACCCATCATCACTGAGTTCCTGCTGTCCCAGACGTCTCAACAAACTGCTAATGCATCCAGCATCAATCAGGCTTCAAAATTATAAAACCCGTCTTCCACACATGTATGAATTTTATGCACATACTCACCATTGCTGGATTTTAATACAAGTACCAGAACTCATTTATTCCTtctgagtgatttttttttaactaagtGATGAGAATGTAAGGCAAGGTGGAACAGGGAGGGAACAGGGAGGTGGAAGAAATATACAAGTTATAAACTAATGTTTAAAGGAATATTCAGTCATTTTTGGCCCGTCTTAACTGAAACTACATTTTTGAAACTCAAGATCCGAACAAATAGTCCCTCACTTAGTGAGGGACAATAGTCCCCCAAAGCCACACACATACTAGACAAGATGATGTGAATGCTAGTATATGAGGAAGAGTATCAGGAGGAGTGACAGGGAGCATGATTGACAGGCAGGTAGAGACGCCTCCTTTTCCCGATTGGCTGGATGTTGGTGGTCCGTATCATTTCACCCCTTTACAGCCTGGGATGTCCACAGAGGTATTTTATTGAGGAGAAATTCTCCAAATATGTGTGGCAGCCCGAGAATATGGAActgaaaactgaactgaaatatgctTCCCCTCTGCACATATCTCAGCCACAAATAAAGTTCTGGTGGTCCAAAattgaaaagggagaaaactgcatttaaagattccttTGAATGTGGTGCAGGAGcattacagacattttgacagctggtatctgattacaaactgaacagattaggcttatgtccatttcactacaGCACATAGCTATACATATTATACTGTACTCTAGTAACATTATCAAATGAATTTTCTCTGGcactgtgtttctctctcactctctctccttgtctgtTGTGTGTCCTCGGTGCTGATActtacaaatgaaataaaacaaatcagttGCACAACACAAATCACACAATATTTCACTGAGTTATTGGttatatttgcatatcagaTTGCATATCATGTATTGTTTCTTGATGAACAAAACTAGCtgtattgtcatttttattactttataacTAATGTTTTATTCGTAGTCTTTGTGATAATCTGActatgaagtattttaatgctttaaatataaaagaaaccctgctctg

Function

symbol description
serhl2 Predicted to enable hydrolase activity. Predicted to be located in cytoplasmic vesicle.

NR:

description
PREDICTED: serine hydrolase-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932291.2 True 2199 mRNA 0.43 14 11053094 11059498

Neighbor

gene id symbol gene type direction distance location
c26h19orf67 NA coding upstream 51416 10996738 ~ 11001678 (+)
pnpla6 LOC108258612 coding upstream 125243 10894036 ~ 10927851 (+)
LOC117596166 NA coding upstream 166295 10883180 ~ 10886799 (+)
LOC117596104 NA coding upstream 169907 10879995 ~ 10883187 (+)
LOC113537595 NA coding upstream 204780 10842546 ~ 10848314 (+)
sept3 sept3 coding downstream 8511 11068009 ~ 11079689 (+)
atf7ip atf7ip coding downstream 25044 11084542 ~ 11129515 (+)
grin2bb grin2b,grin2bb,LOC108258482,LOC107676879,LOC107551907,LOC107692185,LOC107603025,LOC107712222,LOC107718709 coding downstream 79891 11139389 ~ 11241579 (+)
si:ch211-243a20.4 NA coding downstream 201230 11260728 ~ 11268151 (+)
zgc:101679 zgc:101679,f8a1,LOC108258498,LOC108428241,LOC107551875,LOC107676892,LOC107712230 coding downstream 210037 11269535 ~ 11274442 (+)
G373939 LOC107692181,LOC108428230,LOC107712223,LOC107603033,LOC107676851,LOC107561874 non-coding upstream 87939 10961739 ~ 10965155 (+)
G373934 NA non-coding upstream 101614 10948931 ~ 10951480 (+)
LOC113537644 NA non-coding upstream 119291 10929744 ~ 10933803 (+)
G373871 NA non-coding upstream 242077 10809826 ~ 10811017 (+)
G373870 NA non-coding upstream 245650 10806240 ~ 10807444 (+)
G373975 NA non-coding downstream 10624 11070122 ~ 11091105 (+)
G373982 NA non-coding downstream 76055 11135553 ~ 11135936 (+)
G373997 NA non-coding downstream 220318 11279816 ~ 11280114 (+)
G374262 NA non-coding downstream 348757 11408255 ~ 11409661 (+)
G374293 NA non-coding downstream 413201 11472699 ~ 11472973 (+)
G373955 LOC108258951 other upstream 43474 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 793563 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 1176541 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 2582880 8465708 ~ 8470214 (+)
G372351 u2af1,LOC102219527,LOC107380862,LOC103389252,LOC105917412,LOC101158751 other upstream 2899239 8149960 ~ 8153855 (+)
LOC113537724 sept3 other downstream 2518 11062016 ~ 11068002 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 1050073 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 2957025 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 2963752 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 3299244 14358742 ~ 14360604 (+)

Expression


Co-expression Network