LOC113537644


Basic Information

Item Value
gene id LOC113537644
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10929744 ~ 10933803 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU442861
ATGtcagctcattcacacacatgaatcaaacagaaaagaagaaacacTTCTCTTTCTACCTTTAATTCTCTCCTCTAGCTGAAGGCAAAGAAATCCATCACAAAAGCAACAATAGGAGGTCTCAccacagacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtatacaAGAGGTTTAGGGCTTGAGCAAGCTGACTGAGTGACTGCATAGTGAATATTTGGTTTACTTACAGATGGGGGGGGGATATCAATAAAACTCCCATCATACAGCGCTGGAGGAgtacacaccccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactaatgctaTCGAAGCAGCGGCACCGGTGTGATCTCTGCTTCTCGTTCCACTGAGGCTGAGGTCATGTACTGCTCATCggaaatgaaaaatgtgcacacacatgctcacagcactgacactaaagaaaaaaaaaatgaacaatcaaaaataaaataacaatcatGACATTACACGAATAAAAGTGTCAGCAAAAAGAAGAGAGGTACAGTCGGAAAATCGGAACATTAACACTCAGAACTCGAGCTTTCCTTGGATATGTGTGTACTAACGGTACAGGGTAAGAGAGAGCATGATACagctttttattaataaacgtTTGGTTGCAAAGAAGTTTATATAGGTGTTTAATGACAGCTGATCTGTTTGAATGCGTTTACATGCACAAAATAATCCAGTGTTTCCCAGTAATTAccttaattacattaattagtcCCGCCGGTTTCATAATGAACcgaaaatatttttacacatctCATAATAATGTAAAAGATCTCTATTTTGCACCATTGCTTCAGCAAAGCATCTCTTTCTCCAAGTCACTCAGACCACTCCCCCCTGGGTCAGTCAGACCACTCCCCCTGGGTCAGTCAGACCACTCCCCTCCCTCGTGCTGTACTTGAGCATGCTCACACACGCACTGGAAGCACCTGGGTGCATCCGAGACACCAAGGCATTTTGAGAACACAACATCGTTTGAGGTAAGTAACGTTAACCTCTCAACTGCTGttgattgttgttgtttacagtCACTGCACACTATTATCATGAcaatcttatttaatattaacttaTTAGAAGGATTTAGGACTCAATACTTGACTACTTTTTATGATACAAACGGTTACAGTGACAgtaatttcttaatttctgaCAGGAGTACACATCAAACATGCAAAATCAAACCGGTAGTTATTGATCTTTCGAATGGCATAACGCGACACGTACATATTCAATTGTGCCTGTTTTCGTTTCTTTGTGATCACAGAGCTTCGCTAAACAACAACTAAATAATGACCCTGCTAGCCAGTGAGTGTGATGAATGGGGACAGATCAACCCATTACGCAGCCGTTTGGCAGCAACTGCACTTGTCATTCTGGTGTCAAGCGTCAACTGTGAGAGAGACTTCTCCACACTGAACAGGGGCAGGACAGAGGGCATGGCAGCATGACCGAGTTGCCGAGATGTGCACCAAACATTTAACCCCACTGCACTTACATGATAAACTGCATATTCTTCTTAACTAAAAGAAGAAGTACAAACAGTGCACTCCAAATacttcttttcattcattcatttggctaATTGTAGTTACCTTCATTTTCAGGTTGAATCAGAGCTTTGCAACAGGCTGTGAGGAGAGCAACTGGCTGAAGGTCTCCATCAGCGGGCCGAGCCCAGAGGAATTCAACTACACAAGGGCATTAAAACTGGTTTTCTCAAAGCCCAGCAACATTAAATGTCCAAATTCAGGGTGTAAAGTTTGCCAATAGGGATGTAGGGAGATCAATACCATGTCATCTTCAtccagtatttatttatttatttattttttgttttctaaaaaacAAACCAGTTCACCACAGGTAACCACTTTTGCTTCATTTCTTTGATGGCTCAAATGTATTCTCAAGTCGATTTTGTGTTCTGCCCGTTTGTGAACCACGTTCACCATACTTTGTgggtgtgactttttttttgccgtGTCATCACCATTCATTATCTATACAACCagtgtgtttatgattaaattacTACTAGAGCACAAAATTGTTTACAAGAGCACATAGTTCTTCAGAGGTCTAGATTCTTAATTTTGCTCTCAAAGTGCATCAGATTGATGCATTTAACATCAAAATGTACAGAATCTTCTTACGGGGGTAGCATGCCCCCGGACAAAATCCTGTGGAGAAACACTGGAATCTGATAATGTTTCAAGGTTTACAGTTTGATAATCAGAACCTTCCTTCTACACAAGTCAGTCAGTAGGTAGATTTCTTTTAGTAATGCtgctataaatatttttcaatagCAAAGTGTCTGTATCGGGGCCCAAGATCGGTTATCAGCCGACTCACAGCTCTGATATTGATATCGCCTCAAAAGGAGAAATCAGGACCTCACTACTTTACACATTAGGCaacttgtaaatatttaaactatTTTCATGACCAAACAGCTGATtagcatttataaatgttacacaaGTTCTTTTTCATAAGgtatacaatattaaaaatatatcagctttgttatgtttttttatcgAGTCAAGTTAGTGCTAAATTTGTATTTGGGAGTTTTTAATGTCTGATCCACACTACAGTATTTATACAATGTTAACAGAGGTAGAACATTCGAGACCCCAGACATAATGACAGACACCAAACACTATATTACCGATTAAGCTTACAACCCACGCTTAGCCTAACTGACCAATGATCGTGAGCTTCGAAACCTGGGATTTTGCAGAATttcttgtggaaaaaaaatctgacttcAGATCAGAACAAACACTAGGGACAACAGTTCAGCTTACTGGTTATCAGTCTGTCATGCAAGACGTCAAGATTCCAGTAAATCCGAGGGgttaaaaatatacacacctcacaccaCAGTATAATCGGAGAAGATAATCGGACAAACTGGCGCTCATCTGAAGCTTCTGATTCGGGCAAAATTATCCTCTAGTGTGGCTCAGACATAAGGTTATCAAACTGactctactaaaaaaaaattacccttCTATATCAGtcagaaaaatttaaaaatgaaagatatcACATTAACACTATACATTTGCTAAATAATCTGATTATTCGGATGAAATCTAGGTGGCAACTTTCttgaaatgtatataatgaGATTTAAAAGGTAGTATGCTATTTACACAATCACGTGAATGccgtaaatatgtgaatttacaCGGccacttttaataataatgatgcagtGAATGCCGAGATCGGGTAATAATCGGATTATTAGTATGCATGTAAACGCATTCAGGGAACATACTCGTAACGTAACTGGTTGTGCTAGTTAAATGTGTGGAAATGTAAACGTGGTTTAGGCTGTTCCACAGATCTCTCTTATCTGCATGTGAAATTTAGCAAGCACAGTGGCTGCACAAGCCATACAGAAGTGTCAGTATCACCGTGCTGACTCAGCATTAATATGCTTTCGGTTGTAGTTTAATCTTTTACAAATGGATGACACCTTTAGCTGGGTGACATTTCACAAGATCTACACTCAGAAAGAGCAAGTGACTGACTGACAAACTGACAGAAAGTGATCATGTGGGGCAAGCCGGCAGGTTTGGAGATTTTTATACTGTACACAATATCATATTTTATAGTGCATTTAATGCAGATATGCTGATAAAGATGGCAGACTGGGGGAAAAAGGTGAAGCCCATCTCATAGGTATTGTAATATCaatttttaaacttataaagCTTCCTTTCTGTTGAAGCCCATCTACCCAGACTGCTATTCAACAGAAAAAACAATGAGGAGAAATTTCAAAACGCTACATCCACCACAGGACGGAACAGACTAAAGCTAACACAAATCACACCTACCTACATGATTACAGCTAACTGCTGAAATAGAGCTCTTATATAAATATGACCACTCGCATCTTTAATACTTGTTCTACCAATAATTAGTTAGCTATGAAATTGAA
>XR_004577352.1
CTGTACTTGAGCATGCTCACACACGCACTGGAAGCACCTGGGTGCATCCGAGACACCAAGGCATTTTGAGAACACAACATCGTTTGAGAGCTTCGCTAAACAACAACTAAATAATGACCCTGCTAGCCAGTGAGTGTGATGAATGGGGACAGATCAACCCATTACGCAGCCGTTTGGCAGCAACTGCACTTGTCATTCTGGTGTCAAGCGTCAACTGTGAGAGAGACTTCTCCACACTGAACAGGGGCAGGACAGAGGGCATGGCAGCATGACCGAGTTGCCGAGATGTTGAATCAGAGCTTTGCAACAGGCTGTGAGGAGAGCAACTGGCTGAAGGTCTCCATCAGCGGGCCGAGCCCAGAGGAATTCAACTACACAAGGGCATTAAAACTGGTTTTCTCAAAGCCCAGCAACATTAAATGTCCAAATTCAGGGTGTAAAGTTTGCCAATAGGGATGTAGGGAGATCAATACCATGTCATCTTCAtccagtatttatttatttatttattttttgttttctaaaaaacAAACCAGTTCACCACAGGTAACCACTTTTGCTTCATTTCTTTGATGGCTCAAATGTATTCTCAAGTCGATTTTGTGTTCTGCCCGTTTGTGAACCACGTTCACCATACTTTGTgggtgtgactttttttttgccgtGTCATCACCATTCATTATCTATACAACCagtgtgtttatgattaaattacTACTAGAGCACAAAATTGTTTACAAGAGCACATAGTTCTTCAGAGGTCTAGATTCTTAATTTTGCTCTCAAAGTGCATCAGATTGATGCATTTAACATCAAAATGTACAGAATCTTCTTACGGGGGTAGCATGCCCCCGGACAAAATCCTGTGGAGAAACACTGGAATCTGATAATGTTTCAAGGTTTACAGTTTGATAATCAGAACCTTCCTTCTACACAAGTCAGTCAGTAGGTAGATTTCTTTTAGTAATGCtgctataaatatttttcaatagCAAAGTGTCTGTATCGGGGCCCAAGATCGGTTATCAGCCGACTCACAGCTCTGATATTGATATCGCCTCAAAAGGAGAAATCAGGACCTCACTACTTTACACATTAGGCaacttgtaaatatttaaactatTTTCATGACCAAACAGCTGATtagcatttataaatgttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU442861 True 4060 lncRNA 0.39 1 10929744 10933803
XR_004577352.1 False 1163 lncRNA 0.41 3 10930729 10932319

Neighbor

gene id symbol gene type direction distance location
pnpla6 LOC108258612 coding upstream 1893 10894036 ~ 10927851 (+)
LOC117596166 NA coding upstream 42945 10883180 ~ 10886799 (+)
LOC117596104 NA coding upstream 46557 10879995 ~ 10883187 (+)
LOC113537595 NA coding upstream 81430 10842546 ~ 10848314 (+)
atp11a atp11a,LOC107718450 coding upstream 272026 10564386 ~ 10657718 (+)
c26h19orf67 NA coding downstream 62935 10996738 ~ 11001678 (+)
serhl serhl2 coding downstream 119291 11053094 ~ 11059498 (+)
sept3 sept3 coding downstream 134206 11068009 ~ 11079689 (+)
atf7ip atf7ip coding downstream 150739 11084542 ~ 11129515 (+)
grin2bb grin2b,grin2bb,LOC108258482,LOC107676879,LOC107551907,LOC107692185,LOC107603025,LOC107712222,LOC107718709 coding downstream 205586 11139389 ~ 11241579 (+)
G373871 NA non-coding upstream 118727 10809826 ~ 10811017 (+)
G373870 NA non-coding upstream 122300 10806240 ~ 10807444 (+)
G373522 NA non-coding upstream 266232 10645863 ~ 10663512 (+)
G373538 NA non-coding upstream 355249 10511081 ~ 10574495 (+)
G373540 NA non-coding upstream 399078 10528816 ~ 10530666 (+)
G373934 NA non-coding downstream 15128 10948931 ~ 10951480 (+)
G373939 LOC107692181,LOC108428230,LOC107712223,LOC107603033,LOC107676851,LOC107561874 non-coding downstream 27936 10961739 ~ 10965155 (+)
G373975 NA non-coding downstream 136319 11070122 ~ 11091105 (+)
G373982 NA non-coding downstream 201750 11135553 ~ 11135936 (+)
G373997 NA non-coding downstream 346013 11279816 ~ 11280114 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 670213 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 1053191 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 2459530 8465708 ~ 8470214 (+)
G372351 u2af1,LOC102219527,LOC107380862,LOC103389252,LOC105917412,LOC101158751 other upstream 2775889 8149960 ~ 8153855 (+)
LOC113537319 LOC108258902 other upstream 5360449 5560082 ~ 5569295 (+)
G373955 LOC108258951 other downstream 72205 11006008 ~ 11009620 (+)
LOC113537724 sept3 other downstream 128213 11062016 ~ 11068002 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 1175768 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 3082720 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 3089447 14023250 ~ 14042614 (+)

Expression


Co-expression Network