RNA id: XR_004577352.1


Basic Information

Item Value
RNA id XR_004577352.1
length 1163
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC113537644
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10929744 ~ 10933803 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTACTTGAGCATGCTCACACACGCACTGGAAGCACCTGGGTGCATCCGAGACACCAAGGCATTTTGAGAACACAACATCGTTTGAGAGCTTCGCTAAACAACAACTAAATAATGACCCTGCTAGCCAGTGAGTGTGATGAATGGGGACAGATCAACCCATTACGCAGCCGTTTGGCAGCAACTGCACTTGTCATTCTGGTGTCAAGCGTCAACTGTGAGAGAGACTTCTCCACACTGAACAGGGGCAGGACAGAGGGCATGGCAGCATGACCGAGTTGCCGAGATGTTGAATCAGAGCTTTGCAACAGGCTGTGAGGAGAGCAACTGGCTGAAGGTCTCCATCAGCGGGCCGAGCCCAGAGGAATTCAACTACACAAGGGCATTAAAACTGGTTTTCTCAAAGCCCAGCAACATTAAATGTCCAAATTCAGGGTGTAAAGTTTGCCAATAGGGATGTAGGGAGATCAATACCATGTCATCTTCAtccagtatttatttatttatttattttttgttttctaaaaaacAAACCAGTTCACCACAGGTAACCACTTTTGCTTCATTTCTTTGATGGCTCAAATGTATTCTCAAGTCGATTTTGTGTTCTGCCCGTTTGTGAACCACGTTCACCATACTTTGTgggtgtgactttttttttgccgtGTCATCACCATTCATTATCTATACAACCagtgtgtttatgattaaattacTACTAGAGCACAAAATTGTTTACAAGAGCACATAGTTCTTCAGAGGTCTAGATTCTTAATTTTGCTCTCAAAGTGCATCAGATTGATGCATTTAACATCAAAATGTACAGAATCTTCTTACGGGGGTAGCATGCCCCCGGACAAAATCCTGTGGAGAAACACTGGAATCTGATAATGTTTCAAGGTTTACAGTTTGATAATCAGAACCTTCCTTCTACACAAGTCAGTCAGTAGGTAGATTTCTTTTAGTAATGCtgctataaatatttttcaatagCAAAGTGTCTGTATCGGGGCCCAAGATCGGTTATCAGCCGACTCACAGCTCTGATATTGATATCGCCTCAAAAGGAGAAATCAGGACCTCACTACTTTACACATTAGGCaacttgtaaatatttaaactatTTTCATGACCAAACAGCTGATtagcatttataaatgttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442796 lncRNA upstream 119712 10809826 ~ 10811017 (+) True G373871
TU442795 lncRNA upstream 123285 10806240 ~ 10807444 (+) True G373870
TU442398 lncRNA upstream 267217 10645863 ~ 10663512 (+) True G373522
TU442414 lncRNA upstream 356234 10511081 ~ 10574495 (+) True G373538
TU442877 lncRNA downstream 16612 10948931 ~ 10951480 (+) True G373934
TU442882 lncRNA downstream 29420 10961739 ~ 10965155 (+) True G373939
TU442930 lncRNA downstream 129697 11062016 ~ 11064035 (+) False LOC113537724
TU442932 lncRNA downstream 137803 11070122 ~ 11091105 (+) True G373975
TU442943 lncRNA downstream 203234 11135553 ~ 11135936 (+) True G373982
XM_034299947.1 mRNA upstream 2878 10894036 ~ 10927851 (+) True pnpla6
XM_034299946.1 mRNA upstream 2878 10894036 ~ 10927851 (+) False pnpla6
XM_034299948.1 mRNA upstream 2878 10894036 ~ 10927851 (+) False pnpla6
XM_034299949.1 mRNA upstream 2878 10900656 ~ 10927851 (+) False pnpla6
XM_034300281.1 mRNA upstream 43930 10883180 ~ 10886799 (+) True LOC117596166
XM_034300389.1 mRNA downstream 64419 10996738 ~ 11001678 (+) False c26h19orf67
XM_034300388.1 mRNA downstream 64603 10996922 ~ 11001678 (+) False c26h19orf67
XM_034300387.1 mRNA downstream 64606 10996925 ~ 11001678 (+) False c26h19orf67
XM_026931665.2 mRNA downstream 64612 10996931 ~ 11001570 (+) True c26h19orf67
XM_026931666.2 mRNA downstream 64612 10996931 ~ 11001570 (+) False c26h19orf67
TU442162 other upstream 1054176 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 2776874 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 4211903 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 5722998 5207595 ~ 5207731 (+) True LOC113537771
XR_003403603.2 other upstream 6016882 4664294 ~ 4913847 (+) False dmd
TU442901 other downstream 73689 11006008 ~ 11009620 (+) True G373955
XR_004577362.1 other downstream 3084204 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 3090931 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 4147421 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 4182153 15114472 ~ 15116856 (+) False smdt1b

Expression Profile