Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403795.1 |
| length | 137 |
| RNA type | ncRNA |
| GC content | 0.45 |
| exon number | 1 |
| gene id | LOC113537771 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 5207595 ~ 5207731 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0021532 | neural tube patterning | biological_process |
| GO:0007498 | mesoderm development | biological_process |
| GO:0021903 | rostrocaudal neural tube patterning | biological_process |
| GO:0007389 | pattern specification process | biological_process |
| GO:0030917 | midbrain-hindbrain boundary development | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577306.1 | lncRNA | upstream | 91107 | 5113455 ~ 5116488 (+) | True | LOC117596136 |
| TU439100 | lncRNA | upstream | 91320 | 5113477 ~ 5116275 (+) | False | LOC117596136 |
| TU439085 | lncRNA | upstream | 105165 | 5091602 ~ 5102430 (+) | True | G370679 |
| TU439092 | lncRNA | upstream | 140174 | 5067122 ~ 5067421 (+) | True | G370685 |
| XR_003403736.2 | lncRNA | upstream | 155105 | 5048934 ~ 5052490 (+) | True | LOC113537232 |
| TU439246 | lncRNA | downstream | 44386 | 5252117 ~ 5252561 (+) | True | G370811 |
| XR_004577332.1 | lncRNA | downstream | 58438 | 5266169 ~ 5269504 (+) | True | LOC117596163 |
| TU439247 | lncRNA | downstream | 58599 | 5266330 ~ 5268234 (+) | False | LOC117596163 |
| TU439241 | lncRNA | downstream | 62985 | 5270716 ~ 5337208 (+) | True | G370807 |
| TU439243 | lncRNA | downstream | 104846 | 5312577 ~ 5342477 (+) | False | LOC113537354 |
| XM_026932321.2 | mRNA | upstream | 20202 | 5137584 ~ 5187393 (+) | False | si:ch211-132g1.7 |
| XM_026932320.2 | mRNA | upstream | 20203 | 5137584 ~ 5187392 (+) | True | si:ch211-132g1.7 |
| XM_034300090.1 | mRNA | upstream | 20203 | 5140958 ~ 5187392 (+) | False | si:ch211-132g1.7 |
| XM_034300138.1 | mRNA | upstream | 293748 | 4653717 ~ 4913847 (+) | False | dmd |
| XM_026928748.2 | mRNA | upstream | 293748 | 4653718 ~ 4913847 (+) | False | dmd |
| XM_026931967.2 | mRNA | downstream | 155822 | 5363553 ~ 5381998 (+) | True | rcan1b |
| XM_026931969.2 | mRNA | downstream | 156319 | 5364050 ~ 5381998 (+) | False | rcan1b |
| XM_026931968.2 | mRNA | downstream | 156324 | 5364055 ~ 5381998 (+) | False | rcan1b |
| XM_034300241.1 | mRNA | downstream | 190965 | 5398696 ~ 5407644 (+) | True | LOC113537535 |
| XM_026932056.2 | mRNA | downstream | 197308 | 5405039 ~ 5407644 (+) | False | LOC113537535 |
| XR_004577314.1 | other | upstream | 293748 | 4653715 ~ 4913847 (+) | False | dmd |
| XR_003403602.2 | other | upstream | 293748 | 4653716 ~ 4913847 (+) | False | dmd |
| XR_004577313.1 | other | upstream | 293748 | 4653716 ~ 4913847 (+) | False | dmd |
| XR_003403599.2 | other | upstream | 293748 | 4653717 ~ 4913847 (+) | False | dmd |
| XR_003403607.2 | other | upstream | 293748 | 4653717 ~ 4913847 (+) | False | dmd |
| XR_003403794.1 | other | downstream | 1510963 | 6718694 ~ 6718826 (+) | True | LOC113537770 |
| TU441073 | other | downstream | 2942229 | 8149960 ~ 8153855 (+) | True | G372351 |
| TU442162 | other | downstream | 4631365 | 9839096 ~ 9876553 (+) | True | LOC117596102 |
| TU442901 | other | downstream | 5798277 | 11006008 ~ 11009620 (+) | True | G373955 |
| XR_004577362.1 | other | downstream | 8808792 | 14016523 ~ 14021131 (+) | False | gpalpp1 |
