RNA id: XR_004577306.1


Basic Information

Item Value
RNA id XR_004577306.1
length 1705
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC117596136
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5113455 ~ 5116488 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCAGTGCGTTGCGCACCATTGTCCTGTACTGTCTGCCTGCTGAGATGGGTCTTGCCCACAAAGAATTATGGTTTCCCTTCTGTGAATTTCTGCACTACATATGGCGACGAGGATAAAAGAAGATAAATAAGTATGAATAACGAAGCAGCTATTTTCTAGAAGCAAGTAAAAAGCACGACGCCGACGCCGGTAAGCTCAGCTGATTGAGATTAATGACTGCCGCGGGTGGTGACTGATTGAAAGGAATGATGGCTGGAGTGGTCGGATGTGTAGCACCTTTTAATAGTGGATTACAATCATGGGAAGAGTATTGTGAAATGCTGAATCATTTCTCCGTGGCAAATGATGTAGAAACTCCAGAGAAGAAACGAGCCATATTGTTGAGTTGTGTTGGAGCACAGACATGCACACTGATGAGGAATTTGTTGAGTCCAGAGAAACCAGGTATAAAGAGTTTTGAAGAATTGGTGAGTTTATTGAAAAACCACTTTAATCCGAAGCCAAGTGAAATAGTTCAGAGGTGGAAATTTAATTCAAGAAATAGACGCCCTGATGAAAGCATAGTGGAGTATGTGGCTGAGTTAAGGAAACTTGCACAAGATTGCAATTTCGGAGACACACTCACAGTGATGCTGAGAGACAGATTAGTGTGTGGAGTCAGTGATGACAGCATACAGCGGAGATTACTGCCTGAGGATGGATTAACTTTTGAAACGGCACTGAAGAAAGCTCAGGCTATTGAAACTGCTAATAAGGATATGGCAGATTTGAACAGAGTGAAAGGAAATCGTATGAATACTACTGTTTTTAAGATGGACAGTGAAGAAAGAAGTAACCTGACTGGTGCAGGAATGTGTTATCGATGTGGTGGAACTAATCATGGCCCGAAAGACTAAGTTTGCCAACGAAAAATGTTTCAAGTGTGGTAAAATAGGACATGTGAAAAGAGTATGTAGAATGAAACCACAGGAAACTGCTATTAACAAAGGCAGGAAAACGGGAAAATGGGAGAGAGGAAAGCAGTCAAAGAGGGCAAATTTTCttcaggaggaggaagaggaagttcAGTCTGAAGAAATGTTCACTATGTATAGTATGCAAACAGCCCAATCTCAGGTGCCTCCGCTTACACAAGCTTTACTGGTAAATGAGTGCCCTGTGAAATTTGAAATTGACACTGGATGTAGTGTAACTGTTATCATCACAGGTGGAATATTTACTGCAAAATAAAGCTGGACCAGGAACATATATCGCCTGCTTTTAGGAAGAAACTTTTAAGGATCAACTGTTTTGCCACTGTCTCTTCAACCACGCGATTGTGCAGCGACTATTTGCCGGAAAATCTTGGAATCAGCCACCTTGAGTTCCAAAGAAGAGGAACTTTGATCTTTGGAATTGAGTAAAGTAGTATCTGACTGgTGGCAAAGGAGAAGTGGATACAAGTTGAAAGAAGTgacagcagaaaagcatctcagcatgcacaaaacatcgaaccttgaggtggacaggctacaacagcagatggccacatcaggttccactcctgtcagccaagaacaggaatctgaggctatcgtCAGCACAGACTCATGATAACTTGTGTCAcgatagtctcagattcctgttcttggctggcaggagtagaacctgatgtggtctagagactgttgtgtgtgaaattcccaggagatcagcagtttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439085 lncRNA upstream 11025 5091602 ~ 5102430 (+) True G370679
TU439092 lncRNA upstream 46034 5067122 ~ 5067421 (+) True G370685
XR_003403736.2 lncRNA upstream 60965 5048934 ~ 5052490 (+) True LOC113537232
TU438964 lncRNA upstream 200619 4911518 ~ 4912836 (+) True G370583
TU438961 lncRNA upstream 307864 4805033 ~ 4805591 (+) True G370580
TU439246 lncRNA downstream 135629 5252117 ~ 5252561 (+) True G370811
XR_004577332.1 lncRNA downstream 149681 5266169 ~ 5269504 (+) True LOC117596163
TU439247 lncRNA downstream 149842 5266330 ~ 5268234 (+) False LOC117596163
TU439241 lncRNA downstream 154228 5270716 ~ 5337208 (+) True G370807
TU439243 lncRNA downstream 196089 5312577 ~ 5342477 (+) False LOC113537354
XM_034300138.1 mRNA upstream 199608 4653717 ~ 4913847 (+) False dmd
XM_026928748.2 mRNA upstream 199608 4653718 ~ 4913847 (+) False dmd
XM_026928749.2 mRNA upstream 207391 4653717 ~ 4906064 (+) False dmd
XM_026928746.2 mRNA upstream 207391 4653718 ~ 4906064 (+) False dmd
XM_026928744.2 mRNA upstream 207391 4653718 ~ 4906064 (+) True dmd
XM_026932321.2 mRNA downstream 21096 5137584 ~ 5187393 (+) False si:ch211-132g1.7
XM_026932320.2 mRNA downstream 21096 5137584 ~ 5187392 (+) True si:ch211-132g1.7
XM_034300090.1 mRNA downstream 24470 5140958 ~ 5187392 (+) False si:ch211-132g1.7
XM_026931781.2 mRNA downstream 82306 5198794 ~ 5236249 (+) True kpnb3
XM_026931967.2 mRNA downstream 247065 5363553 ~ 5381998 (+) True rcan1b
XR_003403598.2 other upstream 199608 4653718 ~ 4913847 (+) False dmd
XR_003403795.1 other downstream 91107 5207595 ~ 5207731 (+) True LOC113537771
XR_003403794.1 other downstream 1602206 6718694 ~ 6718826 (+) True LOC113537770
TU441073 other downstream 3033472 8149960 ~ 8153855 (+) True G372351
TU442162 other downstream 4722608 9839096 ~ 9876553 (+) True LOC117596102
TU442901 other downstream 5889520 11006008 ~ 11009620 (+) True G373955

Expression Profile