RNA id: TU438961


Basic Information

Item Value
RNA id TU438961
length 435
lncRNA type intronic
GC content 0.41
exon number 2
gene id G370580
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4805033 ~ 4805591 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggcgacagcatccaaacatcccagttcactcTGTGCCTGTGAagcctccagatctgctcctttacctaagaaaaaactattcacaaaaggcttgattaaacaaatgtttttagcctagacttaaacactgagactgtgtctgagccctgaacactaattggaaggctgtttcataactgtggggctttgtaagagaaagtttTAACCCCCGCTGTACtcttcactattcaaggtaccaacaaatagcctgcttttgatcgaagtaggcatgGTGGATCATATAGTTCAGGTACTGAggcgtgagaccattcagtgctttataggtcaatagtagtattttagaATCAATACGAAaattgattgggagccaatgcagtacagctcagccataacattaaaaccacctgtctaatattgtgtagatcctgattgtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438960 lncRNA upstream 16418 4785988 ~ 4788615 (+) True G370579
TU438854 lncRNA upstream 276572 4518121 ~ 4528461 (+) False LOC113535386
TU438766 lncRNA upstream 822053 3981693 ~ 3982980 (+) True G370406
XR_004577294.1 lncRNA upstream 962007 3841646 ~ 3843026 (+) True LOC117596127
XR_004577355.1 lncRNA upstream 972668 3830108 ~ 3832365 (+) False LOC117596177
TU438964 lncRNA downstream 105927 4911518 ~ 4912836 (+) True G370583
XR_003403736.2 lncRNA downstream 243343 5048934 ~ 5052490 (+) True LOC113537232
TU439092 lncRNA downstream 261531 5067122 ~ 5067421 (+) True G370685
TU439085 lncRNA downstream 286011 5091602 ~ 5102430 (+) True G370679
XR_004577306.1 lncRNA downstream 307864 5113455 ~ 5116488 (+) True LOC117596136
XM_034300139.1 mRNA upstream 1852 4653715 ~ 4803181 (+) False dmd
XM_026929267.2 mRNA upstream 152109 4627756 ~ 4652924 (+) True knl1
XM_026929265.2 mRNA upstream 213558 4586287 ~ 4591475 (+) True LOC113535752
XM_026928775.2 mRNA upstream 228548 4568103 ~ 4576485 (+) True atp1b1b
XM_026928776.2 mRNA upstream 256572 4536432 ~ 4548461 (+) False mpc2a
XM_026932321.2 mRNA downstream 331993 5137584 ~ 5187393 (+) False si:ch211-132g1.7
XM_026932320.2 mRNA downstream 331993 5137584 ~ 5187392 (+) True si:ch211-132g1.7
XM_034300090.1 mRNA downstream 335367 5140958 ~ 5187392 (+) False si:ch211-132g1.7
XM_026931781.2 mRNA downstream 393203 5198794 ~ 5236249 (+) True kpnb3
XM_026931967.2 mRNA downstream 557962 5363553 ~ 5381998 (+) True rcan1b
TU438880 other upstream 255267 4536490 ~ 4549766 (+) True mpc2a
TU438816 other upstream 391718 4409519 ~ 4413315 (+) False spry2
trnay-gua_5 other upstream 845214 3959733 ~ 3959819 (+) True trnay-gua_5
XR_003403636.2 other upstream 2427033 2357669 ~ 2378000 (+) False LOC113535805
XR_004577327.1 other upstream 2911204 1853186 ~ 1893829 (+) False hecw2b
XR_003403795.1 other downstream 402004 5207595 ~ 5207731 (+) True LOC113537771
XR_003403794.1 other downstream 1913103 6718694 ~ 6718826 (+) True LOC113537770
TU441073 other downstream 3344369 8149960 ~ 8153855 (+) True G372351
TU442162 other downstream 5033505 9839096 ~ 9876553 (+) True LOC117596102
TU442901 other downstream 6200417 11006008 ~ 11009620 (+) True G373955

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU66945 True 206 lncRNA 0.38 1 NC_048565.1 55069856 ~ 55070061 (+)
bowfin (Amia calva) TU66945 True 570 lncRNA 0.47 4 CM030126.1 18528343 ~ 18536374 (+)
mexican tetra (Astyanax mexicanus) TU66945 True 1443 lncRNA 0.40 3 NC_035902.1 3490920 ~ 3493491 (-)