spry2 (LOC108259026)


Basic Information

Item Value
gene id spry2
gene name LOC108259026
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4407472 ~ 4414899 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU438816
AGTTTGGCTCGTGCACTTGGACTTGAGGCGCCATTTCTGACTTTTTTAcagctgcagtgtttttttaaataaaaagtgatgAAAACTACGAGGACATCCATTTATTCTGCTTTGTGCTGGAGGATGTATTGAACGCGCTGCATCGGACACAcgcactcactcattcacttcacacacacacacacacacacacacacacaggggctcGGAGTGTTGAACTAACGGACTTTCAGATGTGTTCACTTCGCTCCAGAAATCTTCACATCCCCTTTTTGAGCAACAATGGAGCCGAGAGCCCAGGACAGCAGCAGTGGCCTTCTCTCGCTCCACCAGATCCAAACTGTCCATTCCAGCAACGAGTACACAGAGAGTCCCACGACCTGGCCCCGCCCACAAAACTCTGACTCTGCCCCTGATGAAGGTGCTGTGCCAGGTCCAGATGATCACGCTCACGAATCTTCACATTCACCTCGAAGTGCTCGGAGGTCCACATACACAGAACCGTCGTCAGAGCAAGGGACTGTGGGACACAAAGGTGAAATTGTAGTAAAGGAACAGCCGGAGAAACTCGAACAGGAAGTGGAGAAGGGACTCCGTGTGATATCCACTCAGGAGCTAAGCTTTCTGGGAAATTTGGGCAAAAAAGTGACAGCAGTAGAGGAACAACCGAGGAGCTTTGAATCGAAACAGGAACTGTTGGAGCTGGGTGGAAGTTTTATCTCAGAGCAGAGGAGTCTGGAATGTGTAGGCGAACTAGATGTTGCAATACAGGAGCAACCCAAGAGCTGCGACTCGAAACAGGAAGAGATGAAGCTGCTGGGAAGTGCTTCCACAGATCAAGAGCATTTAAAATTGGAACCAAAACAGGAAACGACAAAGCAACACAACAG
>XM_026928756.2
CAGAAGCAGAACTGCGATGCGCGTTTGTTTTCTGACGATGTGGCAACCCGCCGTGCCTGTGCGCGCGCGGACCGGATGCGTTACATCCTGCGGGACAAAGAGCTGCTCTGTTTCCCCtccacgcacgcacgcacgcacgcacacgcgcgcgcgcgtggACCAACTACAGTTTGGCTCGTGCACTTGGACTTGAGGCGCCATTTCTGACTTTTTTAcagctgcagtgtttttttaaataaaaagtgatgAAAACTACGAGGACATCCATTTATTCTGCTTTGTGCTGGAGGATGTATTGAACGCGCTGCATCGGACACAcgcactcactcattcacttcacacacacacacacacacacacacacacaggggctcGGAGTGTTGAACTAACGGACTTTCAGATGTGTTCACTTCGCTCCAGAAATCTTCACATCCCCTTTTTGAGCAACAATGGAGCCGAGAGCCCAGGACAGCAGCAGTGGCCTTCTCTCGCTCCACCAGATCCAAACTGTCCATTCCAGCAACGAGTACACAGAGAGTCCCACGACCTGGCCCCGCCCACAAAACTCTGACTCTGCCCCTGATGAAGGTGCTGTGCCAGGTCCAGATGATCACGCTCACGAATCTTCACATTCACCTCGAAGTGCTCGGAGGTCCACATACACAGAACCGTCGTCAGAGCAAGGGACTGTGGGACACAAAGGTGAAATTGTAGTAAAGGAACAGCCGGAGAAACTCGAACAGGAAGTGGAGAAGGGACTCCGTGTGATATCCACTCAGGAGCTAAGCTTTCTGGGAAATTTGGGCAAAAAAGTGACAGCAGTAGAGGAACAACCGAGGAGCTTTGAATCGAAACAGGAACTGTTGGAGCTGGGTGGAAGTTTTATCTCAGAGCAGAGGAGTCTGGAATGTGTAGGCGAACTAGATGTTGCAATACAGGAGCAACCCAAGAGCTGCGACTCGAAACAGGAAGAGATGAAGCTGCTGGGAAGTGCTTCCACAGATCAAGAGCATTTAAAATTGGAACCAAAACAGGAAACGACAAAGCAACACAACAGGAAGCACCCAAAACCATGTGATCGCTGCAACCGCTGCAAGTGCAGGGATTGCACGGCTGCACCGCCCCTTCCGGCCTGCTGGCTCTGTGGACGTCGCTGTCTGTGCTCGGCCGAGGCGATGGTGGAGTATACCACATGTGTCTGCTGCCTCAAAGCGCTGCTCTACCACTGCTCCAGCGATGACGAGGACTCCAGCGCTGATGCTCCGTTTTCCTGCCACGAGTCCCAGAGGTGTAAGCGATGGAGTATGGCAGCAGCCATGGCACTTGTCCTGCCCTGCATGCTGTGTTACGGCCCTGCCCGAGGCTGCCTGGCACTCTGCCAACTCTGCCACGCCCACGCCCACCGGCCCGGCTGCAGATGCAAGAGTCAACACGTAACTCacaatttatgatttgtttttattttgttgtttaggCACTGATGGAggtgatgtttgtttgttttgtgtgtgttgtttgtgtgttctttttttaataataggaTGTGGCAAGCCATGACTCATAGTGTTTAATTCAGACTCATTGTTTTTAGTTCTGacttcatatttttttagtgctgactacttttcattcattattttcaatTTGGACCCATTACTTTTAGTTTTGACTCAGTTTGACTCGTGTGTTTTTGATTTGGATGTTTTGGGAAATTGTGGACGTGGGACAGGACACTGACAGTGCTGTAACATTCACTTTTTCTAggagtttttcagtttttatttttgatttgtgATTGTTAACGTTGTACTTTTAGCACTGTAGACCAAGAAACGTGACAGAGTGGAAagtggactgtttttttttttttttttgcattgtggtATGATTTGGACAGATGGAGACTTATTTGTTTCTTTGATATATTTTCTTGTTGTCTTGTTCATTTATGTGTTGACACAATGTAGTTCTGACACTgtagatgaaagaaagcaaagtGGGAAGCAGCGACACTCAGTGATTCCCTTTGACTCATGAATCTGGTTATTTTTAACTCAGGAATTTGATTGTTGTTgaagttttgtgttttgcattatgcattttcactttgattttttttttctctttttaaactAAAGTCAAAATTACCATGTTTATTAATATGTGTGTTGATGTAACCAGCAATAacactttttacactttttacaaATGACACCAATTTGTAAATTAGTAATTTGATTAGTTCCTCAgagatggttttatttttatacatttgagCTGTGAAAAGTGTCATGTCATACCTGGACACCTCGACAgatctttatatataaaacatttatggtGCATTTATTAGTGttgtacatacatttttaatatttgtgctTTACATGTTTTGAATTATCCCTGGAGCAATACTTGTAAAATtgtacagtgaaaaaaaattttctaatttttaattgtttgatgTAAAggatatttattttaagtttttattgtgcaaacaaatatttatttttacagaagcACCTATCGTGCTAACATTGAGAAacataaatgctgtaaataatgcaaataagaGTGTCATGTGTGAAACTTATATTCATTATGAAGCAGAAAATATATTAACGTTGTTGAAATTCt

Function

NR:

description
PREDICTED: protein sprouty homolog 2

GO:

id name namespace
GO:0007275 multicellular organism development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU438816 False 890 TUCP 0.49 2 4409519 4413315
XM_026928756.2 True 2640 mRNA 0.43 4 4407472 4414899

Neighbor

gene id symbol gene type direction distance location
LOC113535457 slitrk1,LOC107570247,LOC107756981,LOC107744763,LOC107556534 coding upstream 425908 3978449 ~ 3981564 (+)
slitrk6 slitrk6 coding upstream 617744 3744241 ~ 3789728 (+)
gpc6a LOC108258291 coding upstream 1339494 2931643 ~ 3067978 (+)
LOC113535484 LOC108258552,LOC108258555,LOC108258559 coding upstream 1622320 2782289 ~ 2785152 (+)
LOC113535757 LOC108258552,LOC108258557,LOC108258555,LOC108258559 coding upstream 1630666 2772491 ~ 2776806 (+)
ndfip2 LOC108258991,LOC107750462,LOC107674006,LOC107549434,LOC108411896,LOC107676059,LOC107750051 coding downstream 14358 4429257 ~ 4443367 (+)
zgc:174945 NA coding downstream 117508 4532407 ~ 4533861 (+)
atp1b1b LOC108258321 coding downstream 153204 4568103 ~ 4576485 (+)
LOC113535752 LOC108439359,LOC100334711,LOC107723198,LOC107564241,LOC107692626 coding downstream 171388 4586287 ~ 4591475 (+)
knl1 knl1 coding downstream 212857 4627756 ~ 4652924 (+)
G370406 NA non-coding upstream 424492 3981693 ~ 3982980 (+)
trnay-gua_5 NA non-coding upstream 447653 3959733 ~ 3959819 (+)
LOC117596127 NA non-coding upstream 564446 3841646 ~ 3843026 (+)
LOC117596177 NA non-coding upstream 575107 3830108 ~ 3832365 (+)
G370326 NA non-coding upstream 802749 3604361 ~ 3604723 (+)
G370579 NA non-coding downstream 371089 4785988 ~ 4788615 (+)
G370580 NA non-coding downstream 390134 4805033 ~ 4805591 (+)
G370583 NA non-coding downstream 496619 4911518 ~ 4912836 (+)
LOC113537232 NA non-coding downstream 634035 5048934 ~ 5052490 (+)
G370685 NA non-coding downstream 652223 5067122 ~ 5067421 (+)
LOC113535805 NA other upstream 2029472 2357669 ~ 2378000 (+)
hecw2b hecw2,LOC108258347,LOC107676038,LOC107674007,LOC107556280,LOC107566886 other upstream 2513643 1853186 ~ 1893829 (+)
prkag3a prkag3a,LOC108258362,LOC103034078,LOC107673997,LOC108437121,LOC107750059,LOC107676055 other upstream 2599134 1797604 ~ 1808338 (+)
abcb6a abcb6,abcb6a,LOC108258352 other upstream 2624032 1769149 ~ 1783440 (+)
radil radil,LOC107725399 other upstream 2993728 1387799 ~ 1413744 (+)
LOC113535386 LOC108258920 other downstream 103222 4518121 ~ 4528516 (+)
mpc2a LOC108258922,LOC107564279,LOC107692629,LOC107665976,LOC108439361 other downstream 121533 4536432 ~ 4549766 (+)
dmd LOC108258700,LOC107095375,LOC108439357 other downstream 238816 4653715 ~ 4913847 (+)
LOC113537319 LOC108258902 other downstream 1145183 5560082 ~ 5569295 (+)
G372351 u2af1,LOC102219527,LOC107380862,LOC103389252,LOC105917412,LOC101158751 other downstream 3735061 8149960 ~ 8153855 (+)

Expression


Co-expression Network