ndfip2 (LOC108258991,LOC107750462,LOC107674006,LOC107549434,LOC108411896,LOC107676059,LOC107750051)


Basic Information

Item Value
gene id ndfip2
gene name LOC108258991,LOC107750462,LOC107674006,LOC107549434,LOC108411896,LOC107676059,LOC107750051
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4429257 ~ 4443367 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929162.2
TACTCTGctttcaatctggcaaccccacTCCCACTCGCTCTGTGCTTTGCCGTTGTGTGAGCAGGCGGATGTCTTTCTAGAGCTTAGTACCAAAACACTGTTTAAACTGGATTTGTTGTAAATGGGGGCAATATATACCCTTCGTTTTCAACAAAACTATCCCGTTAGCTGTTTACATTTCGACAACTAAAGTTATTTAGCgttatttttttgtgatttttttctagtAACGgctgtgaaaaattaaaatggagTCAGCGGTTAGCCGCTATCAAGTGTTGCACAATGAGGATGACCCCTCTGAAACAAACCTTGCCGAAGAGCCTTCCACTTCCTCCCAGGCTGCCGCAGCTAACAACCCTGTCGCCATGGCATCAGATAGCGAGGTTCCGCCCCCCTCTTACGCCAGCTTGGCGTTAGGAGCTACAGCCACTCCGGagCATGTGTTTCAAGGGGATTTTCCTGTTCCACCCCCCTACAGCGTGGCCACATCACTCCCCACCTACGATGAAGTCGAGAAAGCCAAAGCAGCTGAACTTGCAGCCTCGACCGGCGACAGCATACCACGAGATGAGGATTTTCCTCCACGAGATGATTTCAGTGATGTTGATCAGCTGCGTGTCGGAAACGATGGCATCTTTATGCTGGCCTTTTtcatggCCTTCCTGTTTAACTGGATTGGTTTCTGCTTGTCCTTCTGTCTCACTAACACCATTGCCGGCCGTTACGGAGCAATTTGTGGATTCGGCCTGTCACTCATCAAGTGGATCCTCATCGTCAGGtTTTCTGATTATTTCACCGGGTACGTTAACGGACAGTACTGGCTCTGGTGGATATTTCTGGTTCTGggtctcCTGCTGTTCTTTAAAGGTTTTGTGAACTACCTGAAAGTGAGGAACATGTCTGAGGCAATCGCCAGCACACAGAGAGCTCGCTTCTTCTTCCTCTATTAaaaGATCACTTCCCTGAACATTCCTCCTGCTGATATGTAACTTGTTGAACAAGAACAGGAAGTGGATGCAGTGTGAAAGGACATGGAGAaaaggagcgagagagaggacAATAAGGAGCTCTGCAAAACCCTGCCCCCTTATTAAAGCCACTCGAGCTTCATCAAATCCTAATTTCATCCCTAATACCGATGTTGTTTGCCAAAATTCCATGTAGTTTAATAATGAAGTTTGCTAGTTTGGGAAAATATTTACTGTTGAATGACGATCTACAAACTGCAcgcagacaaataaaaaaaaaaatgaacaaaaacccTCAAAAATATGCAGCCAAGATGTCCTATgcaattttcttaatttaaatgtgaacaGTGATTTGTTGATCATTAGCACTTTTTGAATTAAGGACCTTGGCAAATTTTACTGCAGTATTAACATGTGCTTGataatttaattgtttaagTAATGATAAGGTCAAACTTCATGCTGATGTACgatattttttgcacattttctgaGAAGTTTCTAATGCTGTTTTTGCTTAATTGTATTGAAGAGCTTGTGGGAATTTTATTTAACTGTGTTGTGGTTAGTTACATGAAACAGCCAATCAAATGGAAAGGATTTGAGaagtttttgaaaatgttcaGTTCCGCTTCCTGTCCATTTCATTGGTTTAATCATAACCCTGTCTACTTTAAGGAGGTTTGCGTTTAGCTAATTAATATTCTCATGTTTCATTATAGATTAGCGTCGTTAAGATGTTAAGGCTGGAAGTGCGAATCTCAAATATTCctttttttgcactttcttgatattagattttttattgattaaatattaatgtgtaaattTCCTCAAACTGTGAACAGGGATTAGATTAGTGTAGGAAATGTAAACCGCTTAAATGCGGCAACTGTTCAATCAGCAATAGCGGATGATTAATAGCATAGCTCAGTGCATGGTTATAACACGCAGCTGCGCcattttaaactgaataatgaaataaaacctaTCAAAATGCTTACAA

Function

NR:

description
PREDICTED: NEDD4 family-interacting protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929162.2 True 1980 mRNA 0.41 8 4429257 4443367

Neighbor

gene id symbol gene type direction distance location
LOC113535457 slitrk1,LOC107570247,LOC107756981,LOC107744763,LOC107556534 coding upstream 447693 3978449 ~ 3981564 (+)
slitrk6 slitrk6 coding upstream 639529 3744241 ~ 3789728 (+)
gpc6a LOC108258291 coding upstream 1361279 2931643 ~ 3067978 (+)
LOC113535484 LOC108258552,LOC108258555,LOC108258559 coding upstream 1644105 2782289 ~ 2785152 (+)
LOC113535757 LOC108258552,LOC108258557,LOC108258555,LOC108258559 coding upstream 1652451 2772491 ~ 2776806 (+)
zgc:174945 NA coding downstream 89040 4532407 ~ 4533861 (+)
atp1b1b LOC108258321 coding downstream 124736 4568103 ~ 4576485 (+)
LOC113535752 LOC108439359,LOC100334711,LOC107723198,LOC107564241,LOC107692626 coding downstream 142920 4586287 ~ 4591475 (+)
knl1 knl1 coding downstream 184389 4627756 ~ 4652924 (+)
si:ch211-132g1.7 LOC108258292,LOC108258945 coding downstream 694217 5137584 ~ 5187393 (+)
G370406 NA non-coding upstream 446277 3981693 ~ 3982980 (+)
trnay-gua_5 NA non-coding upstream 469438 3959733 ~ 3959819 (+)
LOC117596127 NA non-coding upstream 586231 3841646 ~ 3843026 (+)
LOC117596177 NA non-coding upstream 596892 3830108 ~ 3832365 (+)
G370326 NA non-coding upstream 824534 3604361 ~ 3604723 (+)
G370579 NA non-coding downstream 342621 4785988 ~ 4788615 (+)
G370580 NA non-coding downstream 361666 4805033 ~ 4805591 (+)
G370583 NA non-coding downstream 468151 4911518 ~ 4912836 (+)
LOC113537232 NA non-coding downstream 605567 5048934 ~ 5052490 (+)
G370685 NA non-coding downstream 623755 5067122 ~ 5067421 (+)
spry2 LOC108259026 other upstream 14358 4407472 ~ 4414899 (+)
LOC113535805 NA other upstream 2051257 2357669 ~ 2378000 (+)
hecw2b hecw2,LOC108258347,LOC107676038,LOC107674007,LOC107556280,LOC107566886 other upstream 2535428 1853186 ~ 1893829 (+)
prkag3a prkag3a,LOC108258362,LOC103034078,LOC107673997,LOC108437121,LOC107750059,LOC107676055 other upstream 2620919 1797604 ~ 1808338 (+)
abcb6a abcb6,abcb6a,LOC108258352 other upstream 2645817 1769149 ~ 1783440 (+)
LOC113535386 LOC108258920 other downstream 74754 4518121 ~ 4528516 (+)
mpc2a LOC108258922,LOC107564279,LOC107692629,LOC107665976,LOC108439361 other downstream 93065 4536432 ~ 4549766 (+)
dmd LOC108258700,LOC107095375,LOC108439357 other downstream 210348 4653715 ~ 4913847 (+)
LOC113537319 LOC108258902 other downstream 1116715 5560082 ~ 5569295 (+)
G372351 u2af1,LOC102219527,LOC107380862,LOC103389252,LOC105917412,LOC101158751 other downstream 3706593 8149960 ~ 8153855 (+)

Expression


Co-expression Network