LOC117596136


Basic Information

Item Value
gene id LOC117596136
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5113455 ~ 5116488 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU439100
GTCCTGTACTGTCTGCCTGCTGAGATGGGTCTTGCCCACAAAGAATTATGGTTTCCCTTCTGTGAATTTCTGCACTACATATGGCGACGAGGATAAAAGAAGATAAATAAGTATGAATAACGAAGCAGCTATTTTCTAGAAGCAAGTAAAAAGCACGACGCCGACGCCGCTGGACCAGGAACATATATCGCCTGCTTTTAGGAAGAAACTTTTAAGGATCAACTGTTTTGCCACTGTCTCTTCAACCACGCGATTGTGCAGCGACTATTTGCCGGAAAATCTTGGAATCAGCCACCTTGAGTTCCAAAGAAGAGGAACTTTGATCTTTGGAATTGAGTAAAGTAGTATCTGACTGggtaaaatgaaattttaattccAGACCTATATAGAATAGAGTGTATATGACTGTGACAGgaatttttaattctgtaattgaATAACGTATCTGGATTTTCTGTGCATTTCAGCAGAAAGTTCCGCTTGTAAGACCACCCAGAGAGTCCATCCCTCAAACAAACCCCTGTGACTAGCGGCGTTAGAATTATTTAGCTAAAATGCGTATTTTGCTAAAAGTCTAAGTTTCTCGGATAGAAATGGATattaaagaaaactgaaaaccATTGAGCAAACTACATAAATCCAATTTTAATtcctctccctccccctctGTCTCTTTTAACACGATCACTGTACCTGTGATTTACTAGAAAACAGCGATTCCATAGCAGTGGCTAAATTAATCAGAATCTAGCAGCAGGTAATGATACAAGCACAAGTGGCAGTGAGCTTAAACAGCgactttttttcttcagcatgtCACCTATATTCATTAACGTGACATCCATTATTGAATAAAATGAGTTTTAGAAAAGAAATTTTACTTGAAAAattatatgtaatttatttatttttaaatttgtatgtCCTTTAAGTGGCAAAGGAGAAGTGGATACAAGTTGAAAGAAGTgacagcagaaaagcatctcagcatgcacaaaacatc
>XR_004577306.1
GAGCAGTGCGTTGCGCACCATTGTCCTGTACTGTCTGCCTGCTGAGATGGGTCTTGCCCACAAAGAATTATGGTTTCCCTTCTGTGAATTTCTGCACTACATATGGCGACGAGGATAAAAGAAGATAAATAAGTATGAATAACGAAGCAGCTATTTTCTAGAAGCAAGTAAAAAGCACGACGCCGACGCCGGTAAGCTCAGCTGATTGAGATTAATGACTGCCGCGGGTGGTGACTGATTGAAAGGAATGATGGCTGGAGTGGTCGGATGTGTAGCACCTTTTAATAGTGGATTACAATCATGGGAAGAGTATTGTGAAATGCTGAATCATTTCTCCGTGGCAAATGATGTAGAAACTCCAGAGAAGAAACGAGCCATATTGTTGAGTTGTGTTGGAGCACAGACATGCACACTGATGAGGAATTTGTTGAGTCCAGAGAAACCAGGTATAAAGAGTTTTGAAGAATTGGTGAGTTTATTGAAAAACCACTTTAATCCGAAGCCAAGTGAAATAGTTCAGAGGTGGAAATTTAATTCAAGAAATAGACGCCCTGATGAAAGCATAGTGGAGTATGTGGCTGAGTTAAGGAAACTTGCACAAGATTGCAATTTCGGAGACACACTCACAGTGATGCTGAGAGACAGATTAGTGTGTGGAGTCAGTGATGACAGCATACAGCGGAGATTACTGCCTGAGGATGGATTAACTTTTGAAACGGCACTGAAGAAAGCTCAGGCTATTGAAACTGCTAATAAGGATATGGCAGATTTGAACAGAGTGAAAGGAAATCGTATGAATACTACTGTTTTTAAGATGGACAGTGAAGAAAGAAGTAACCTGACTGGTGCAGGAATGTGTTATCGATGTGGTGGAACTAATCATGGCCCGAAAGACTAAGTTTGCCAACGAAAAATGTTTCAAGTGTGGTAAAATAGGACATGTGAAAAGAGTATGTAGAATGAAACCACAGGAAACTGCTATTAACAAAGGCAGGAAAACGGGAAAATGGGAGAGAGGAAAGCAGTCAAAGAGGGCAAATTTTCttcaggaggaggaagaggaagttcAGTCTGAAGAAATGTTCACTATGTATAGTATGCAAACAGCCCAATCTCAGGTGCCTCCGCTTACACAAGCTTTACTGGTAAATGAGTGCCCTGTGAAATTTGAAATTGACACTGGATGTAGTGTAACTGTTATCATCACAGGTGGAATATTTACTGCAAAATAAAGCTGGACCAGGAACATATATCGCCTGCTTTTAGGAAGAAACTTTTAAGGATCAACTGTTTTGCCACTGTCTCTTCAACCACGCGATTGTGCAGCGACTATTTGCCGGAAAATCTTGGAATCAGCCACCTTGAGTTCCAAAGAAGAGGAACTTTGATCTTTGGAATTGAGTAAAGTAGTATCTGACTGgTGGCAAAGGAGAAGTGGATACAAGTTGAAAGAAGTgacagcagaaaagcatctcagcatgcacaaaacatcgaaccttgaggtggacaggctacaacagcagatggccacatcaggttccactcctgtcagccaagaacaggaatctgaggctatcgtCAGCACAGACTCATGATAACTTGTGTCAcgatagtctcagattcctgttcttggctggcaggagtagaacctgatgtggtctagagactgttgtgtgtgaaattcccaggagatcagcagtttctg

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU439100 False 1003 lncRNA 0.38 2 5113477 5116275
XR_004577306.1 True 1705 lncRNA 0.43 3 5113455 5116488

Neighbor

gene id symbol gene type direction distance location
knl1 knl1 coding upstream 460531 4627756 ~ 4652924 (+)
LOC113535752 LOC108439359,LOC100334711,LOC107723198,LOC107564241,LOC107692626 coding upstream 521980 4586287 ~ 4591475 (+)
atp1b1b LOC108258321 coding upstream 536970 4568103 ~ 4576485 (+)
zgc:174945 NA coding upstream 579594 4532407 ~ 4533861 (+)
ndfip2 LOC108258991,LOC107750462,LOC107674006,LOC107549434,LOC108411896,LOC107676059,LOC107750051 coding upstream 670088 4429257 ~ 4443367 (+)
si:ch211-132g1.7 LOC108258292,LOC108258945 coding downstream 21096 5137584 ~ 5187393 (+)
kpnb3 ipo5,kpnb3,LOC107677849 coding downstream 82306 5198794 ~ 5236249 (+)
LOC113537771 NA coding downstream 91107 5207595 ~ 5207731 (+)
rcan1b rcan1b,LOC108258573,LOC108429864,LOC107555267,LOC107698909,LOC107718018 coding downstream 247065 5363553 ~ 5381998 (+)
LOC113537535 LOC108258302,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC107555266,LOC105889574 coding downstream 282208 5398696 ~ 5407644 (+)
G370679 NA non-coding upstream 11025 5091602 ~ 5102430 (+)
G370685 NA non-coding upstream 46034 5067122 ~ 5067421 (+)
LOC113537232 NA non-coding upstream 60965 5048934 ~ 5052490 (+)
G370583 NA non-coding upstream 200619 4911518 ~ 4912836 (+)
G370580 NA non-coding upstream 307864 4805033 ~ 4805591 (+)
G370811 NA non-coding downstream 135629 5252117 ~ 5252561 (+)
LOC117596163 NA non-coding downstream 149681 5266169 ~ 5269504 (+)
G370807 atp1a1a.4,LOC108258576,LOC108429865,LOC108429869,LOC107717913,LOC107653679,LOC108429867 non-coding downstream 154228 5270716 ~ 5337208 (+)
LOC113537354 atp1a1a.4,LOC108429865,LOC100136184,LOC106575572,LOC100136390,LOC107568776,LOC107653679,LOC107555265,LOC107717913,LOC105889581,LOC106536549,LOC106525268 non-coding downstream 196089 5312577 ~ 5342485 (+)
G370876 NA non-coding downstream 269149 5385637 ~ 5385841 (+)
dmd LOC108258700,LOC107095375,LOC108439357 other upstream 199608 4653715 ~ 4913847 (+)
mpc2a LOC108258922,LOC107564279,LOC107692629,LOC107665976,LOC108439361 other upstream 563689 4536432 ~ 4549766 (+)
LOC113535386 LOC108258920 other upstream 584939 4518121 ~ 4528516 (+)
spry2 LOC108259026 other upstream 698556 4407472 ~ 4414899 (+)
LOC113535805 NA other upstream 2735455 2357669 ~ 2378000 (+)
LOC113537319 LOC108258902 other downstream 443594 5560082 ~ 5569295 (+)
G372351 u2af1,LOC102219527,LOC107380862,LOC103389252,LOC105917412,LOC101158751 other downstream 3033472 8149960 ~ 8153855 (+)
LOC117596101 LOC103370040 other downstream 3349220 8465708 ~ 8470214 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other downstream 4722608 9839096 ~ 9876553 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other downstream 5096545 10213033 ~ 10259531 (+)

Expression


Co-expression Network