RNA id: TU438880


Basic Information

Item Value
RNA id TU438880
length 2229
RNA type TUCP
GC content 0.41
exon number 5
gene id mpc2a
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4536432 ~ 4549766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCGCCTGAAGGCAACTGGAGCGCGCGCGCCACATTTCCACTCAGATTAAAATTTCGCAGCGCTTATGGGCGTAGTGACAACAATGCGCTTTTCAGACGACATTGTGACATGGTGACATTGCGATAGGTCGTATCGGAGGGTGGAGAATAATCTCACAGTGAGCTCACTTGGAAAGGGTGACCTGAATATTTCTCTGGAATCGTATCGACGGCTAGAAACACTATGAACGGCGCTAGAGGCTTCCTGCGACTGCGACGCTATTATTCCAGTGGTCTAAGAGTCACATATCACAGGACGCTGGACAGAATCGAGCTTATGCTTCCACCCAAACTGAGACCTCTGTACAACCACCCAGCAGGACCAAAGACAGTTTTCTTCTGGGCACCTGTTTTTAAATGGGGCTTGGTTGTTGCAGGTTTTTCTGATCTGACACGTCCACCAGAAAAGCTGAGTGTCTCCCAATCAGGTGTCATCACAGCCACAGGCTTCATTTGGTCACGGTACTGCTTGGTGATCATTCCTAAGAACTGGGCACTCTTTGCAGTAAACTTCTTCTTGGGCTTatgtggaagcacacaactcCTGAGAATCTGGAGGTACAATCAGCAGTTAAAGCAGAAAGAAGATGAAGTGCAACAGTCCTGAAGCTGAAAGGAACACAGTTTACTGGATACCATCATGAATTCAGTGAAACAGTGTGAAAAACCAAAGGGAGAGAGATTTATAACAATGTATATGGTTTAttggtttttatttcttattgcaAATGTCAAGAATCCATATgttacatcattacatcattaactgccaagaaaagcaaaaaacagaaTGTATCAAATGTCATGTATAACGTTTTCAGTGACAGTAGCAGTGCCACAAACACCCTAAAGAATTCTTAATAAACTGCTTAATTTCATtcaaatatgtgtgtgcatgtatgtaatTTACTTTTCATATACATAAATAGGGACATTATAATCCAATTGCATTATAAGAATTTCTAGTTATCACTCCCCGCTGTACCTAGCCGTATCACTCTCTCCAAATGTGCATGCTAACCTAAACATCTACATGtccgaaagaaaaaaaaacactgaaatattagTATGAAGAAGAATCTAAGATGAAGTGCTGAATGAATGCAGCTGCTAATACAACTGGCTgcaattttacagaaaatgtcgGACCACGTTTCAACTACAATGCACAGCAGTGGTTGGCTCTTAACACAATATGGGCTACCACAGCTCTCTGTTTACTGTTGTAGTTTGCTACTCTAATGGTGAATCACTGgctaagaggaaaaaaagatgacctgagatcactgattggtcatttTTGGTGTTTGACTGATTAGCTTTTTATGACTCCTAAACTTTAtgcaaaaatgtgtgaaaattctAAATGCTAACAATCACTATTATAATCCCAAAGAAATGAAGTAAGTATGAATCAGTTTTTACTCAATTGTAAACCAGAGAAAACTAAAGCTGATAGCAAGACTTGGCCCACCAACTAATGATACACATAAAAGGGTATAATGTATCCAAAATATCCTGAAATCTAAATATGAGGAAATATAACTATGGTGCTGAGATAAGTTGTAAAGTTGTATAGAAAGTCCTCAGTGACAACTTGTTTGATTTTGCTTAGCCTAATCATTAAATTATTGGATTTATTGAGGTAATTTActgctgttttttccccctctttcgGCTGCTACCTTTCGGGGTTACCACAGCAGATCACCCGGCCACATATTTTGATTCTGGAACAAGTTTTACACCGGAtgtccttcctgatgcaaccctccccatttcCAGGCtcgggaccggcactgagagtgcactggctCGTGCAACCGTCCAATGGCTGGGGTTATTTCCCTGACCAGAAATAAAACCCGGACAGCGGCAATGAGAGCGCTGCATGCTAGCTAGTCCACCATGGAACCATTGAGGTAATTTACAGCACCAGAGCAAATTTAGACTCCAGGCATAAAGATGTGGAAACTATTAACATAGGCTTATAACGTACAGCAGAGGCACCGATTTAGATATCTGCCAGTGGGCGCCCCTAATAATCAACTTTCTACTATAACCGTAGCCTATATGACTTTTTGTCATAAGAAAATTAAGCAATAAAAGCATTATCACACTGTTGTAATGAATAACATCACGGCTGTGATTATCTGCGGCTTTTTGACTACGGCCAAATCACATTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438854 lncRNA upstream 8029 4518121 ~ 4528461 (+) False LOC113535386
TU438766 lncRNA upstream 553510 3981693 ~ 3982980 (+) True G370406
XR_004577294.1 lncRNA upstream 693464 3841646 ~ 3843026 (+) True LOC117596127
XR_004577355.1 lncRNA upstream 704125 3830108 ~ 3832365 (+) False LOC117596177
XR_004577354.1 lncRNA upstream 704125 3830499 ~ 3832365 (+) True LOC117596177
TU438960 lncRNA downstream 236222 4785988 ~ 4788615 (+) True G370579
TU438961 lncRNA downstream 255267 4805033 ~ 4805591 (+) True G370580
TU438964 lncRNA downstream 361752 4911518 ~ 4912836 (+) True G370583
XR_003403736.2 lncRNA downstream 499168 5048934 ~ 5052490 (+) True LOC113537232
TU439092 lncRNA downstream 517356 5067122 ~ 5067421 (+) True G370685
XM_034300374.1 mRNA upstream 2629 4532407 ~ 4533861 (+) True zgc:174945
XM_026928635.2 mRNA upstream 7974 4524685 ~ 4528516 (+) True LOC113535386
XM_026929162.2 mRNA upstream 93123 4429257 ~ 4443367 (+) True ndfip2
XM_026928756.2 mRNA upstream 121591 4407472 ~ 4414899 (+) True spry2
XM_026928751.2 mRNA upstream 554926 3978449 ~ 3981564 (+) True LOC113535457
XM_026928775.2 mRNA downstream 18337 4568103 ~ 4576485 (+) True atp1b1b
XM_026929265.2 mRNA downstream 36521 4586287 ~ 4591475 (+) True LOC113535752
XM_026929267.2 mRNA downstream 77990 4627756 ~ 4652924 (+) True knl1
XM_026928750.2 mRNA downstream 103949 4653715 ~ 4809365 (+) False dmd
XM_034300139.1 mRNA downstream 103949 4653715 ~ 4803181 (+) False dmd
TU438816 other upstream 123175 4409519 ~ 4413315 (+) False spry2
trnay-gua_5 other upstream 576671 3959733 ~ 3959819 (+) True trnay-gua_5
XR_003403636.2 other upstream 2158490 2357669 ~ 2378000 (+) False LOC113535805
XR_004577325.1 other upstream 2642661 1853186 ~ 1893829 (+) False hecw2b
XR_004577314.1 other downstream 103949 4653715 ~ 4913847 (+) False dmd
XR_003403602.2 other downstream 103950 4653716 ~ 4913847 (+) False dmd
XR_004577313.1 other downstream 103950 4653716 ~ 4913847 (+) False dmd
XR_003403599.2 other downstream 103951 4653717 ~ 4913847 (+) False dmd
XR_003403607.2 other downstream 103951 4653717 ~ 4913847 (+) False dmd

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU469856 True 1557 TUCP 0.37 4 CI01000300 1749900 ~ 1759036 (+)
striped catfish (Pangasianodon hypophthalmus) TU469856 True 2216 lncRNA 0.32 1 NC_047622.1 12377209 ~ 12379424 (+)