RNA id: XM_026928750.2


Basic Information

Item Value
RNA id XM_026928750.2
length 9231
RNA type mRNA
GC content 0.44
exon number 63
gene id dmd
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4653715 ~ 4913847 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCACAGGCTGTCCTAGAGCAGTATCATTCACAAATTTCTGGGTGCTGTTGCAGAAATATATAGTTACAAATCTCTGGAAATTTTACTTTGCTAAAACTTCTATTAGTGTAAGACACTTCCTGACACTTGGAATCTGACATGGCTGAAGCTGCTTGTGCAGAGGACCAGTGGGAGGTAGAAGTTTGTGAGGATGAATTTGGTGAAATCATCAAAACTAGATCAGATGAAAGAGAAGACATACAAAAGAAAACCTTCACAAAATGGATGAATTCCCAACTTGCTAAGGCAGGAAGACCCCCTATTAATGACCTCTTCACAGATCTGTGTGATGGCCGTCGTCTTCTGGAGCTTTTGGAAGGCTTGACTGGGCATGAATTGGTGAAAGAGCGTGGTTTCACCCGAGTGCACTCACTCAATAATGTCAACAGAGTGCTACAGATCCTTCAGAAGAACAATGTTGAGCTGGTGAATATTGGAGGAGCTGACATTGTTGATGGCAATCATAAATTGACTTTGGGACTCATCTGGAGCATAATTCATCACTGGCAGGTGAAGGATGTGATGAAAGATGTGATGGCAGACTTAAAGCAAACCAACAGTGAGAAGATTCTCTTGAGCTGGGTTAGACAGTCCATCAAGAGCTACCCACAGGTCAATGTTGTAAACTTCTCTAGCAGCTGGGAAGATGGTCTGGCCTTTAATGCTCTTATCCATAGCCACAGgCCGGAGCTGTTTGATTGGGATGTGGTGGAACAGATGGATAAAGCTTGTGACAGGTTGGATCATGCGTTCGCCATTTCTGAAAGGCATTTGGGCATTGACCGGCTGCTTGACCCTGAGGATGTGGCTACTGCTTCTCCAGATAAGAAGTCTATAATTATGTACGTCACCTCCCTGTTTCAAGTTCTGCCCCATGGTGTGAGTATGGAGGCCATAAAGGAGGTTGAGACTCTCCCCCAAGCTGTAATCTCTAAAGAGAAACATTTCCAATTTCAAACACAACAGCGTTATTCCCAGCAGaTCACTGTGAGTGTGGCTCATAGACAAGTAGGCAGCCAGTCTCCTTCAAATAAGTTACGCTACAAAAGCTATGCCTTCACTCAGGCTGCATATGTTCGGTCTCCTGAACAGAAAAGAAAGGCCCCCGTCGCACTGACTTCAGACATTCCAGAGGATGTGTGGCCTTCCCCTGGTCCTCTCCAACATGGCACAAACCAGCTAGAGAGTTACCAGAATTCCCTGGAAGAGGTCTTGACGTGGCTTCTGTCTGCTGAGGATGGCCTGCAAGCTCAGCCACCCATCTCCTCTTTTGTAGAAGAAGTGAAGGAGCAGTTTCACACTCATGAGGAATACATGATTGAGCTGACTGCCCATCAGGGAAGTGTAGGTAACGTGCTAAAGGCAGGGAGCATCCTCTTGGCTGAAGGGCAGCTGACTGAAGATGAGGAGAATGAAATTCAGGAGCAAATGAATCTGTTGAACTCTCGCTGGGAGCATTTACGAGTGGCCAGTATGGAACGACAAAGCAGGCTTCATGAAGTTTTAATGGACCTGCAGAATCAGCAGCTGAAACAGCTCTCCACCTGGTTAGATGTTACTGAAGCTCGAATTAATCAAATTGAAGCCCAGCCTTTAGGTCCTGAAATTGAAGACCTAAAACATCAAATTGAAGAGCACAagCTGTTACAAGAGGATCTGGAAATGGAGCAGGTGCGAGTAAACTCTTTGACTCACATGGTTGTAGTAGTGGATGAAAGCAGTGGAGACGGTGCTACTGCAGCACTGGAGGAGAAACTGCAGAACCTTGGAGAGCGATGGGCAGCCATCTGTAAATGGACAGAGGACCGGTGGATCCTCCTTCAGAAGATCCTGAGGAGTTGGCAGCATTTCACTGAGGAACAGCATATGTTTGAGTCCTGGCTAACACAGAAGGAGCAGTTATATCTTTCTATCCAAAGCTGTGGTACCACTGATCACAATGAAGTGGCAGCCAATCTCAGAAAGCTTGCTATTCTGAAAGCAGACATTGAGCTCAAAAGACAGACCATGGACAAACTTTGCTCCCTTGTTCAAGATCTATTGTCCAGCATTAGGAATAAGCAGGCATCAGCAAAACTTGAATCAAAGTTAGAAATGTTCGCTCAGCGGTGGGACAAGCTAATACAGTCACTTCAGCTCACCAGCACCAAGCTTTCAACCACACTTCCTGCATCCCCGTCTGAAAGTACACAAACAACTGTGGAAACCAGCATTACCATGCATCAGAAAAAAGTGGTGAAGCATGCTAAAGAGGGTCTGACTACACCTCCACCTCAAAAGAAGCGTCAGATTGTTGTCGACTCAGAGCTTCGCAAGAGGTTTGATGTGGATTTCACTGAGATTCACAGTTTCATGACCCGCTCAGAAGCCATCTTACAGAGTCCTGAATTCTCAGTTTCACGCAAAGAGGGCAGTGTTGCAGACCTCTATGAGAAAGTCTTGGCAATTGATAAAGAAAAACCAGAGAAGCTTAGAAAGCTACAGGAAGCAACGCGGTCAGCTCAGGCTCTAGTAGATCAGCTCACAAGTgATGGGCAGAATTCTGATGATATTCAGCAAGCCGCTCAGCAGTTACATGCCCGGTGGGTTGAGTTTTGTTCTCTGCTGGCTGAGAGGCTAGCGTGGCTGGCCTACCAGACTAAAGTACTGGCTTTCTACAATCTCTTCCACAACTTGGAGCAGATAGTAGCAAATTCAGAGAACTGGCTGAAAATTCAGCAACCCCCAGCCTGTGAGCCAGAACCTCTAAGGATCCAACTTGAGCGCTGCAGGGATGAGATAGCTCGTCTGTCTGTGCTTGAACCAGAAGTGGAGCACTTACATGGACAACTTCGGGAgctaagagagaaagaggaaacacAGGTCCTCTTTGATGCAGATATAGCTGCATTCCAGGACCACTACCAGAATGTTCTTGCAGACCTAAAGGCCAGAGAGAAACAGCTTGTATTAGtcCAGTCTAGCCTTCCACCTACACACTACAAGGAAGTAATGGCAGCCCTAATGGCATGGCTGCAACAATGTGAAGACAAACTACCTTCTACAGCTGTAACTGAGTACCCGATCATGGAGCAGAGGCTGAAAGACATCATGGCAATTCAAGCAGCGCAAAAAGAGCACCAGAGTAAAAAGGATGATCTTAATAAGATGGCTGAACAGGTGTACCAGAAAGCTCCCCCTGAGATATCTCAAAGGTATCACATTGAGATGGACAGTATGATGGCCTTTTGGAGACATACGTGTGAAAAACTAAGAGAGAACATACAAAAATTGCAGGAACACATGACCAAGCTGCAGCAGTTCCAGAATGACACAAAGACCCTGCAGAAGTGGATGGCCGAGGTTGATGTTTTTCTGAATGAGGAGTGGCCAGCTTTAGGAGATTCAGAGGCTCTTGAGAAGCAACTAGAACAGTGCACAGCCTTAGTTAATGACATTCACACTGTCCAACCTAGTCTTAATGGCATCAATGAGGTTGGACAGGTCTTGAAGAAGGAAGCAGAGCCACCATTTGCTGTCAAAATACAGAAGCAGCTTGATGACCTCAATTCTCAGTGGGAACTAATTTGCAAACAGGCATATGCAAAAAAATCTGCCTTGAAAGGTGGACTGGATATGACAGTGAGTTTGAAGAAGGAAATGCAAGAGATGCAAGAGTGGATTACACAAGCAGAAGAAGATTATCTGGAGAGTGATTTCCATTATAAAACACCTGAAGAACTCCATACAGCAGTGGAGGAACTTAAGAGAGCTCAAGAAGAAATCCatcagaaagaaataaaggtaAACCTTCTGGAAGATAAAGTCACCAGTTTTATTGCGAAGGCTCCACCCATAGCCCACGAGGCGCTAAAGGCAGAACTAAATGTTTTGACTTCCAACTACCAACGGCTGTGTAGTCGGCTTGATGGGAAGTACAAGACATTAGAGGAGGTGTGGGCTTGCTGGTGTGAATTGCTGTGCTACTTGGAACAGGAAAATACTTGGATGGATCTACTAGAACAGAAACTTAATGAGATGGAGAACTATCAAGGAGGAGCAGACAAAATAGCGGAGGCTCTCGCTTCTTTGGATACCATGATAAAAGAACATCCTGAATATAATCGTAACCAAATACGTGAGTTGGCCCAGACCCTTATGGATGGAGGAGTCCTTGATGAGCTCATTCATAAGAAGGTGGAAAATTACAACATTCGCTGGGATGAACTTATGCAAAGGGCTTTACAAAGGCGACAACAGCTGGAGAAGAGCTTACAGTGGGTGAACAAGAATGACAAAACTCTGCGTCTAATCCAAGATTCTCTAAAGGCAACTGATCGTCATTTGACTGCATATCTTGCAGATGGTATAGACGCTGCTCAGATACCTCAGGAATCTCAGaaaattcaaACTGAACTGAGTGGTCATGAAGTGACTCTAGATGGCATGAAGAAACAGTCCAGTGAGGATGCGTCAGAAAAAATGGTCACTGAGATTGATGCTACATATGCTAAATTATTGGAGGTGAAAGCAAAGTTTCGACTTTTCCAAAAGCCAGCCAACTTTGATCAGAGATTGAAAGAATGCGAACGTGTTTTGGAAGAGGTGAAGGGTGAACTGGGGGTACTGAGTATCCACAGTGTAGAGCAGGATGTGCTGCAATCCCAGTTGGAGCAGTGCATGAAGTTGTATAAAAGTCTAAGTGAAGTGAAATCAGAAGTGGAGATGGTAATTAAGACAGGAAGGCAAATTGTGCAAAGACAACAGACAGAGCAACCCAAAGAGCTGGACAACCGTTTGACAAGTCTTAAACTCATATACAACGACTTGGGTGCACAGGTGACAGAAGGAAAGCAAGCACTAGAAAAGAGTTTGAAGTTAttgagaaaatttaaaaaagacataaaaagtcTAACAGATTGGTTAGCAGTGGTTGATAGTGAACTGACTTCTCGGTCATCAGTGGATGGAATACCTAGTGACCTAGAAGCGGAGCTGACATGGGCCAAGACCACACAAAAGGATACAGAGCAACGTACACCCCAACTCTGTTTAGTAAGAGATTTAGCAGAGGCCCTGAAATCACTCTTAACAGAGGAAAGCCTAATAGATGACAAAGTCAGCCTGTTGAACAGCAACTGGATTGCTGTGACATCACGCAGTGAACAGTGGCTAAAGTTGTTGCTGGATTACCAGAGTCAGATGAATACGTTGGAGCAGAATGTTGCTCATATAAATGCCTGGATAGACAGAGCTGAGACTCAGATGGACAAGATGGAGAACCAGGGCTGCATTAACCACATCATCAAGAGTCTACAAGGAGAATTGGAGGAGATGCGTGGGAAGGTAGTGGAGGTACAAAATCTTGGTGAAGACATCATTAAAAACAGGGGGGAGCACTGTAAAACTCAAATAGAGACCAAGCTGAATCAGCTCAGTCAACGCTTTGAGATGGTTACCAGAAGGATTCTACATGGACAGGCTTCCTCTCAAGAGTTAGAAGAGTACCACAGGCAAGCTAATATGTGGCTACTCCAGCTGGAAGAAGAGATAAAACTTGGTGAAGATATCAAAGAAGATGATTTCATAGAAGATGCAGTTGTTGATGAAGATGAACTGAAGGACCTTTTCTTAAAAGGAGAAAATCTCCTTAAGAGAACAACAGATCCAGCAAAGTCAACTGTTTGTCAAAAACATAATCTACTCCATGATAAATACAACACCTTGAAGAGCCTGAAAGCACTTAGGAAGAAGAAGGCACTTGCTTTTGCCCCACAGTGGTACCAGTTCTGTAAGAGGTCAGAGGATATGATGCAGTGGCTTGACAACATTGAGAAGATGGTGGCTGAACTGCCAGATTCGGCAAATCAGCCAAGAGTGAAGATTGGCACTGAGATCGAACAGCAGCGCCCAGTACTTGAAGATGTGCGGAGTCTTGGTCACAAGCTCTCAGAAGATGGCTTTGTCAAACTTGTGGAACTGCGCCTCATTCCCATTAATAAACGCTGGGAACAGCTGGACATGAAATTTGATGAAGTGTATCATGTCAGTGAACTGCAAGCTTTACTGCATACTattgatgaaaatgatgcaCTCCTGAACTCCTCTGTGTGCTGGTCTGACATAACTGAAAATATACCCCAACAAGGAAAGTGCCTTAAGGAAGTAAAGCATACTTTGGACACCCTCGAATTTCCAGTGACAGAGGCTttagagaagaaaaacataCCCCCTCATGTGAATCCACTTGTTCATCTCCTCAGTACCAAGTGGGAAAAACTGAAGAGGCTCTATGAGAATAGACTAGGatTCTTTGACAAATGCAAGAAATATGGGGAGGTGTTAAAAGCCATCCAGGATTGGCTGACTGTTGCAGAAAAAACATTATTGATGTATGAGGAAGACCCAAACATCAATGCAAGCCACATCAAGGAACTGCAAGAAGATTTGGAAAATCAAGAGGCAGCAGTGAAAGGGCTTAACGCTCTAGGTAAGGACCTGGCCTTGCAGGGCAGGAAGGATAATGaagaacagattaaaaagcaaCTAGATGCCATCAATACCCGCTGGACTACAGTGTCCAACCAGCTgtctgaaataaacagaagATCTACAGGGGAAAAGATTGTACTTGCTGAGCTTCATGAAGATATTGGGGAGTTTCAGTCTTGGCTAGATAAAGCAGAGTGTGTTGCTGCCCTACCAGTAGAACCAGACCATAGGGAACAGCTCAACACTGCATTAGAAAAAGTACAGGCTCAAGTAGCAGAATTACCAAACAGaatgaaaatattacagaaaattaaaacaaaagcgTCATCCCTTTCTGCTGATAAAAACAAGACTTTGGAAAATAGTTTAAAGATTATCCACTTGCGATGGGCCAAGGTGTCATCTAACCTTCCTGAGAAGCAGCAACAGATTGAGAATCACCTGAGAGATTTGAATCTGTACCCCAAGCTCTCTAGCTGGGCCTCTGCAACTAAGAACCTACTTGAACAGTCACCTGAAGCAATTGAACACAAGaTTGATGATATCCAGTCCAAGAAGCCAGAAATAGAAGCAATTTTGGGCAGAGAGCGACCACTATATCAACCTGAAAGGGGCCAGTTTGATAGTCTCAATGCAGACTGGACAATTATTCAAGTGCTGCTTAAGGAATGGAAAAACAAATGTCAAGTTGCAACTGAATACTTGACAAGCAGTGCCCCAGATGTTTCAACAATGGACACATTCAATAATTCAAGTACTGAACTCAATGACTGGCTCTCTCTTCTCGATCACATGATTATAACACAGCGGGTGACAGTAGGAGATCTCAGTGAAATCAATGACCTTAATGTAAAACTCAAGTCAGCAATGAAAGACATGGAACAGAGATGCCCACAGCTGAATAAACAGATCACTGCAGCTGAAAACCTCAAGAACAAAACCAACAACCCTCAGATGCGTGCTACAATTACAGATCAAATTGAGAAATTACAAGCACACTGGGAAGACTCACATACTAAGTTAATGGACAGGGTAATTCAACTTCAGACCATGTATCAAGACTCCAAGGATTGGCTGGATGCCAAGAAAATGGTGGAGTCTCACATAAATCAAGCCAGTGAAAAACtagaaggatggaaggaagtctcatcaagtGCTGATCATGCAAATGTTAAGAAAATTGTTAAAGATATACAGCTGTGGCAAGCTGAAGTTGACGTGACTAATGAACTGGCAAACAAGCTACTGGTCCTTTATGCAAATGATGACACAAGCAAGATTAAACAGATGACTGAGAATATGAATCTTGCTTGGGGCAGTATCAAAAAAGGTGCAGGGGATACAGAGGCAGACCTAGAGACCAGACTGCAGCAAATGCAGCACTTTTATGCAGACCTGGAAATGTTTTGTAACTGGCTAACTGAAGCAGAAACTACAGCAAATGTCTTACAAGGTGCTACGTACAAGGAATGCCTTCTGGAGGATGCAGCCACAGTGCACCACTTACTAGAGCAATGGCAAGATCTCCAGAGGGAGATAGATACCCAGACAGATATGTATCATTCACTTGATGAAAATGGGCAGCGTATTGTGGCATCACTGGGAAGGGCAGACAATGCTATAGTGCTACAAAAACAACTGTACAACATGGAAAAGCGCTGGAAGGACTTATGTAAAAAAGTCAATACTATGAGgCATCACCTGGATGATAGTATGGAACAGTGGAAGCATTTTCATCTATCCTTACAGGGTCTGCTCCAGTGGCTACAGCTTAGGAGGGAGGAGCTGGAGCAACAGAAACCAGTTGGGGGAGATGTCCCTGCTGTTCGTCAGCAACTGATCACCCATAAGGATTTCAGAAGGGAGCTGAGTGCAAAAGATCCTTCAATAAATGAAGCACTTGATAATGTGAAGAGTTTTCTGATTGAGATGCCTGGTGAAGAAAGGAAACATACACCTGTTGAAAGAGATGTCAGCTCAGATGAGAGAATTCAAAATGTAGAACGCATTTTGCGTAAGGAGGCAGAGGATGTAAGCAAACTTTGGAAGAACCTGGGTACAGCTGCTGCAGACTGGCACCAACAGCTGGAGCTAGCTTTGGAGAGACTGATGGAACTTCAAGATACAGCGGATCAGTTAGAGATCAAGCTTCAACAAgcggaaaatgaaaaaaattcttgGGACCCAGTTGGAGACTTGCTTGTTGACAGTTTAAGCGACCAAATCGACATGGTTAAGGGATTCCAGGAGATGATAGCTCTGATCCAGGATGATGTAAATCAAGTCAACAAATTAACCTCTCTGCCTGGTATTCAACTGTCCCCAGACAACctgaagagaaatgatgatctCAATAGGCGATGGAGACTTCTGCAGaTATCGGTTGAAGAACATCTGTCCCAACTTATTGAGGCCCACAGAGACTTAGGACCCAATTCTCAGCATTTTCTACAAGtGTCTGTACAAAGTCCTTTTGAACGCTCTGTTTCTCCAAACAGTGTTCCGTATTATATAAAGTCTTTCGCAGGATTCCTCAGTGAAGGCGTTTGGGGGAAGGGAGTGAATGGAATAGCTCCGCCTTTTCTGAGCATCGGAACCTCGTGAGAAGATTTGCAGGAAAATCTAATGCGTTTTCCTCCAAGGAGAGGGAATATCGAGGCCGCCACTCACAAGAACATCGAGTTCTCAGTTTCCAAGATATCGTTTGGATAAACTGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438854 lncRNA upstream 125254 4518121 ~ 4528461 (+) False LOC113535386
TU438766 lncRNA upstream 670735 3981693 ~ 3982980 (+) True G370406
XR_004577294.1 lncRNA upstream 810689 3841646 ~ 3843026 (+) True LOC117596127
XR_004577355.1 lncRNA upstream 821350 3830108 ~ 3832365 (+) False LOC117596177
TU438964 lncRNA downstream 102153 4911518 ~ 4912836 (+) True G370583
XR_003403736.2 lncRNA downstream 239569 5048934 ~ 5052490 (+) True LOC113537232
TU439092 lncRNA downstream 257757 5067122 ~ 5067421 (+) True G370685
TU439085 lncRNA downstream 282237 5091602 ~ 5102430 (+) True G370679
XR_004577306.1 lncRNA downstream 304090 5113455 ~ 5116488 (+) True LOC117596136
XM_026929267.2 mRNA upstream 791 4627756 ~ 4652924 (+) True knl1
XM_026929265.2 mRNA upstream 62240 4586287 ~ 4591475 (+) True LOC113535752
XM_026928775.2 mRNA upstream 77230 4568103 ~ 4576485 (+) True atp1b1b
XM_026928776.2 mRNA upstream 105254 4536432 ~ 4548461 (+) False mpc2a
XM_034300374.1 mRNA upstream 119854 4532407 ~ 4533861 (+) True zgc:174945
XM_026932321.2 mRNA downstream 328219 5137584 ~ 5187393 (+) False si:ch211-132g1.7
XM_026932320.2 mRNA downstream 328219 5137584 ~ 5187392 (+) True si:ch211-132g1.7
XM_034300090.1 mRNA downstream 331593 5140958 ~ 5187392 (+) False si:ch211-132g1.7
XM_026931781.2 mRNA downstream 389429 5198794 ~ 5236249 (+) True kpnb3
XM_026931967.2 mRNA downstream 554188 5363553 ~ 5381998 (+) True rcan1b
TU438880 other upstream 103949 4536490 ~ 4549766 (+) True mpc2a
TU438816 other upstream 240400 4409519 ~ 4413315 (+) False spry2
trnay-gua_5 other upstream 693896 3959733 ~ 3959819 (+) True trnay-gua_5
XR_003403636.2 other upstream 2275715 2357669 ~ 2378000 (+) False LOC113535805
XR_004577327.1 other upstream 2759886 1853186 ~ 1893829 (+) False hecw2b
XR_003403795.1 other downstream 398230 5207595 ~ 5207731 (+) True LOC113537771
XR_003403794.1 other downstream 1909329 6718694 ~ 6718826 (+) True LOC113537770
TU441073 other downstream 3340595 8149960 ~ 8153855 (+) True G372351
TU442162 other downstream 5029731 9839096 ~ 9876553 (+) True LOC117596102
TU442901 other downstream 6196643 11006008 ~ 11009620 (+) True G373955

Expression Profile