Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577355.1 |
| length | 522 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 2 |
| gene id | LOC117596177 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 3830108 ~ 3832365 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU438673 | lncRNA | upstream | 225385 | 3604361 ~ 3604723 (+) | True | G370326 |
| TU438654 | lncRNA | upstream | 398295 | 3431386 ~ 3431813 (+) | True | G370307 |
| TU438628 | lncRNA | upstream | 599806 | 3230102 ~ 3230302 (+) | True | G370281 |
| TU438428 | lncRNA | upstream | 657019 | 3141713 ~ 3173089 (+) | True | G370092 |
| TU438322 | lncRNA | upstream | 1002622 | 2803525 ~ 2827486 (+) | True | G370010 |
| XR_004577294.1 | lncRNA | downstream | 9281 | 3841646 ~ 3843026 (+) | True | LOC117596127 |
| TU438766 | lncRNA | downstream | 149328 | 3981693 ~ 3982980 (+) | True | G370406 |
| TU438854 | lncRNA | downstream | 685756 | 4518121 ~ 4528461 (+) | False | LOC113535386 |
| TU438960 | lncRNA | downstream | 953623 | 4785988 ~ 4788615 (+) | True | G370579 |
| TU438961 | lncRNA | downstream | 972668 | 4805033 ~ 4805591 (+) | True | G370580 |
| XM_026929327.2 | mRNA | upstream | 40380 | 3744241 ~ 3789728 (+) | False | slitrk6 |
| XM_026929326.2 | mRNA | upstream | 40381 | 3762428 ~ 3789727 (+) | False | slitrk6 |
| XM_026929328.2 | mRNA | upstream | 54037 | 3762428 ~ 3776071 (+) | True | slitrk6 |
| XM_026928953.2 | mRNA | upstream | 762130 | 2931643 ~ 3067978 (+) | True | gpc6a |
| XM_026928956.2 | mRNA | upstream | 762130 | 2931643 ~ 3067978 (+) | False | gpc6a |
| XM_026928751.2 | mRNA | downstream | 146084 | 3978449 ~ 3981564 (+) | True | LOC113535457 |
| XM_026928756.2 | mRNA | downstream | 575107 | 4407472 ~ 4414899 (+) | True | spry2 |
| XM_026929162.2 | mRNA | downstream | 596892 | 4429257 ~ 4443367 (+) | True | ndfip2 |
| XM_026928635.2 | mRNA | downstream | 692320 | 4524685 ~ 4528516 (+) | True | LOC113535386 |
| XM_034300374.1 | mRNA | downstream | 700042 | 4532407 ~ 4533861 (+) | True | zgc:174945 |
| XR_003403636.2 | other | upstream | 1452108 | 2357669 ~ 2378000 (+) | False | LOC113535805 |
| XR_004577325.1 | other | upstream | 1936279 | 1853186 ~ 1893829 (+) | False | hecw2b |
| XR_004577326.1 | other | upstream | 1936279 | 1853186 ~ 1893829 (+) | False | hecw2b |
| XR_004577327.1 | other | upstream | 1936279 | 1853186 ~ 1893829 (+) | False | hecw2b |
| XR_004577300.1 | other | upstream | 2021770 | 1797604 ~ 1808338 (+) | True | prkag3a |
| trnay-gua_5 | other | downstream | 127368 | 3959733 ~ 3959819 (+) | True | trnay-gua_5 |
| TU438816 | other | downstream | 577154 | 4409519 ~ 4413315 (+) | False | spry2 |
| TU438880 | other | downstream | 704125 | 4536490 ~ 4549766 (+) | True | mpc2a |
| XR_004577314.1 | other | downstream | 821350 | 4653715 ~ 4913847 (+) | False | dmd |
| XR_003403602.2 | other | downstream | 821351 | 4653716 ~ 4913847 (+) | False | dmd |
