RNA id: trnay-gua_5


Basic Information

Item Value
RNA id trnay-gua_5
length 73
RNA type tRNA
GC content 0.52
exon number 2
gene id trnay-gua_5
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 3959733 ~ 3959819 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTCGATAGCTCAGTTGGTAGAGTGGAGGACTGTAGATCCTTAGGTCGCCGGTTCGAATCCAACTCGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577294.1 lncRNA upstream 116707 3841646 ~ 3843026 (+) True LOC117596127
XR_004577355.1 lncRNA upstream 127368 3830108 ~ 3832365 (+) False LOC117596177
XR_004577354.1 lncRNA upstream 127368 3830499 ~ 3832365 (+) True LOC117596177
TU438673 lncRNA upstream 355010 3604361 ~ 3604723 (+) True G370326
TU438654 lncRNA upstream 527920 3431386 ~ 3431813 (+) True G370307
TU438766 lncRNA downstream 21874 3981693 ~ 3982980 (+) True G370406
TU438854 lncRNA downstream 558302 4518121 ~ 4528461 (+) False LOC113535386
TU438960 lncRNA downstream 826169 4785988 ~ 4788615 (+) True G370579
TU438961 lncRNA downstream 845214 4805033 ~ 4805591 (+) True G370580
TU438964 lncRNA downstream 951699 4911518 ~ 4912836 (+) True G370583
XM_026929327.2 mRNA upstream 170005 3744241 ~ 3789728 (+) False slitrk6
XM_026929326.2 mRNA upstream 170006 3762428 ~ 3789727 (+) False slitrk6
XM_026929328.2 mRNA upstream 183662 3762428 ~ 3776071 (+) True slitrk6
XM_026928953.2 mRNA upstream 891755 2931643 ~ 3067978 (+) True gpc6a
XM_026928956.2 mRNA upstream 891755 2931643 ~ 3067978 (+) False gpc6a
XM_026928751.2 mRNA downstream 18630 3978449 ~ 3981564 (+) True LOC113535457
XM_026928756.2 mRNA downstream 447653 4407472 ~ 4414899 (+) True spry2
XM_026929162.2 mRNA downstream 469438 4429257 ~ 4443367 (+) True ndfip2
XM_026928635.2 mRNA downstream 564866 4524685 ~ 4528516 (+) True LOC113535386
XM_034300374.1 mRNA downstream 572588 4532407 ~ 4533861 (+) True zgc:174945
XR_003403636.2 other upstream 1581733 2357669 ~ 2378000 (+) False LOC113535805
XR_004577325.1 other upstream 2065904 1853186 ~ 1893829 (+) False hecw2b
XR_004577326.1 other upstream 2065904 1853186 ~ 1893829 (+) False hecw2b
XR_004577327.1 other upstream 2065904 1853186 ~ 1893829 (+) False hecw2b
XR_004577300.1 other upstream 2151395 1797604 ~ 1808338 (+) True prkag3a
TU438816 other downstream 449700 4409519 ~ 4413315 (+) False spry2
TU438880 other downstream 576671 4536490 ~ 4549766 (+) True mpc2a
XR_004577314.1 other downstream 693896 4653715 ~ 4913847 (+) False dmd
XR_003403602.2 other downstream 693897 4653716 ~ 4913847 (+) False dmd
XR_004577313.1 other downstream 693897 4653716 ~ 4913847 (+) False dmd

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnay-gua-148 True 73 mRNA 0.53 2 NC_048585.1 59668731 ~ 59668817 (-)