RNA id: TU438964


Basic Information

Item Value
RNA id TU438964
length 1287
lncRNA type intronic
GC content 0.41
exon number 2
gene id G370583
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4911518 ~ 4912836 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagccattttcaacaaagtacctccattttcaggggcttaaaggtatttggacaaagtgacataattgtaaatataaccataattttaatacttggatgaaaatcctttgcagtcaatgactgtctgaagtctggagcccatagacatcaccaaattctgagtttcctccctggagatgctttgccaggccttcactgcacccaccttcagttgctgtttgtttgtgggtctttctgccttcagtctcgTCTtgtcagtaagtgaaaagcatgctctattgggttgagatcaggcgactgacttggccattgaagaatattccatttctttgccttcaaaaagtcttgagttgctttcgcagtatgtttagggtcattatccacctgcactgtgaagcggcgtcctatcagttttgtagcatttgcctgaatgtgagcagagagtatagccctatacacctcagaattcatcttgctacttctgtcagcagtcacatcatcagtaaagaccAGTGAGCCctttccattggcagccatacattcccatgccataacactgcctccaccatgtttgacacatgatgtggtatactttggatcatgagctgttcctttctttcgccatacttttctcatcccatcattctggtacaagttaatcttggtttcattagtccgaagaatcttattccagaacatgggaggcttttttagatgttttctggcaaagtctaatctggctttcctgttcttgaatgttaccagtggtttgcacCTTGTTacaaaccctctgtatttacattcatgaaggcgtctcttgattgtagattttgacaatgataagCTCCacagtattcttgacttctgttgacgttcgggtttttcttcactaaggaaaggattctgcgatcatccactttagttgtcttccgtggtcttccaggcctttcgatgttgttgagctcaccagtcctttctttctttttaagaatgtacccaactgttgatttggccacacctaaggtttttgctatctctcataaattttttgttgttttttcagcctaatgatggtctCCTTCAATTGCATTgcgatctccttggacttcatattggtagctccagtcgaacagctgtcaaatgccaactcaatacctgatatcaactccagaccttttatcttttttttaagtaacaagGGAGTGGACCGCagctggtcaattaacttcttgtcagtcaattgtccaaataccgttgagcccctgaaaatggaagaactttgtttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438961 lncRNA upstream 105927 4805033 ~ 4805591 (+) True G370580
TU438960 lncRNA upstream 122903 4785988 ~ 4788615 (+) True G370579
TU438854 lncRNA upstream 383057 4518121 ~ 4528461 (+) False LOC113535386
TU438766 lncRNA upstream 928538 3981693 ~ 3982980 (+) True G370406
XR_004577294.1 lncRNA upstream 1068492 3841646 ~ 3843026 (+) True LOC117596127
XR_003403736.2 lncRNA downstream 136098 5048934 ~ 5052490 (+) True LOC113537232
TU439092 lncRNA downstream 154286 5067122 ~ 5067421 (+) True G370685
TU439085 lncRNA downstream 178766 5091602 ~ 5102430 (+) True G370679
XR_004577306.1 lncRNA downstream 200619 5113455 ~ 5116488 (+) True LOC117596136
TU439100 lncRNA downstream 200641 5113477 ~ 5116275 (+) False LOC117596136
XM_026928749.2 mRNA upstream 5454 4653717 ~ 4906064 (+) False dmd
XM_026928746.2 mRNA upstream 5454 4653718 ~ 4906064 (+) False dmd
XM_026928744.2 mRNA upstream 5454 4653718 ~ 4906064 (+) True dmd
XM_026928747.2 mRNA upstream 5454 4653718 ~ 4906064 (+) False dmd
XM_034300140.1 mRNA upstream 5454 4764381 ~ 4906064 (+) False dmd
XM_026932321.2 mRNA downstream 224748 5137584 ~ 5187393 (+) False si:ch211-132g1.7
XM_026932320.2 mRNA downstream 224748 5137584 ~ 5187392 (+) True si:ch211-132g1.7
XM_034300090.1 mRNA downstream 228122 5140958 ~ 5187392 (+) False si:ch211-132g1.7
XM_026931781.2 mRNA downstream 285958 5198794 ~ 5236249 (+) True kpnb3
XM_026931967.2 mRNA downstream 450717 5363553 ~ 5381998 (+) True rcan1b
XR_004577312.1 other upstream 2554 4653718 ~ 4908964 (+) False dmd
TU438880 other upstream 361752 4536490 ~ 4549766 (+) True mpc2a
TU438816 other upstream 498203 4409519 ~ 4413315 (+) False spry2
trnay-gua_5 other upstream 951699 3959733 ~ 3959819 (+) True trnay-gua_5
XR_003403636.2 other upstream 2533518 2357669 ~ 2378000 (+) False LOC113535805
XR_003403795.1 other downstream 294759 5207595 ~ 5207731 (+) True LOC113537771
XR_003403794.1 other downstream 1805858 6718694 ~ 6718826 (+) True LOC113537770
TU441073 other downstream 3237124 8149960 ~ 8153855 (+) True G372351
TU442162 other downstream 4926260 9839096 ~ 9876553 (+) True LOC117596102
TU442901 other downstream 6093172 11006008 ~ 11009620 (+) True G373955

Expression Profile