LOC113537770


Basic Information

Item Value
gene id LOC113537770
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6718694 ~ 6718826 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403794.1
TTTGCCCCTTGAGGCGTTGCAGTACGGCTCTGTGTCGTTTCTGTGTCATAAGGTGGCATAGAACAAAGGGCTATGTTTACGCCTAGTACCCGCCTCTGGCAATGGGTTCTCAGTGTCTTTTTAGCCCTACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403794.1 True 133 ncRNA 0.50 1 6718694 6718826

Neighbor

gene id symbol gene type direction distance location
tmem39a tmem39a,LOC107551106,LOC107662110 coding upstream 112429 6581418 ~ 6606265 (+)
ildr1a LOC108258875 coding upstream 137590 6572458 ~ 6581104 (+)
LOC113537481 ildr2 coding upstream 152010 6542955 ~ 6566684 (+)
gpa33a NA coding upstream 179409 6529709 ~ 6539285 (+)
cd247 NA coding upstream 286736 6415422 ~ 6431958 (+)
fdx1 fdx1,LOC108259004,LOC100304958,LOC102789999 coding downstream 107476 6826302 ~ 6833251 (+)
zgc:136472 LOC108258324 coding downstream 307924 7026750 ~ 7043541 (+)
LOC113537654 NA coding downstream 331760 7050586 ~ 7056581 (+)
si:ch211-199f5.1 pcdh8 coding downstream 421372 7140198 ~ 7144170 (+)
cnmd lect1 coding downstream 426608 7145434 ~ 7156027 (+)
G371517 eed non-coding upstream 47321 6669822 ~ 6671373 (+)
LOC117596116 NA non-coding upstream 81705 6625964 ~ 6636989 (+)
G371253 NA non-coding upstream 353706 6279825 ~ 6364988 (+)
G371279 NA non-coding upstream 425966 6291935 ~ 6292728 (+)
LOC117596159 NA non-coding upstream 486129 6223735 ~ 6232565 (+)
G371636 NA non-coding downstream 221872 6940698 ~ 6940982 (+)
G371752 NA non-coding downstream 362343 7081169 ~ 7082821 (+)
G371771 NA non-coding downstream 404253 7123079 ~ 7157188 (+)
LOC117596122 NA non-coding downstream 507566 7226392 ~ 7235801 (+)
G371826 NA non-coding downstream 533985 7252811 ~ 7253177 (+)
LOC113537319 LOC108258902 other upstream 1149399 5560082 ~ 5569295 (+)
dmd LOC108258700,LOC107095375,LOC108439357 other upstream 1804847 4653715 ~ 4913847 (+)
mpc2a LOC108258922,LOC107564279,LOC107692629,LOC107665976,LOC108439361 other upstream 2168928 4536432 ~ 4549766 (+)
LOC113535386 LOC108258920 other upstream 2190178 4518121 ~ 4528516 (+)
spry2 LOC108259026 other upstream 2303795 4407472 ~ 4414899 (+)
G372351 u2af1,LOC102219527,LOC107380862,LOC103389252,LOC105917412,LOC101158751 other downstream 1431134 8149960 ~ 8153855 (+)
LOC117596101 LOC103370040 other downstream 1746882 8465708 ~ 8470214 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other downstream 3120270 9839096 ~ 9876553 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other downstream 3494207 10213033 ~ 10259531 (+)
G373955 LOC108258951 other downstream 4287182 11006008 ~ 11009620 (+)

Expression


Co-expression Network