G371826


Basic Information

Item Value
gene id G371826
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7252811 ~ 7253177 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU440499
CCTGGTTTGCGTGATGAGCTACAGCATTGTTACTTTCAGATGCAATGTATTTTTTGGCCACATCAAGTTGTGTCTTGAGCTGCGATTATCTAGCCCATAGTGTTTTCAAATCCGTGATGATATTGCATTTCTGTCAGAGTGCTTCCCTTTTTTGAGCCTAAAAGGATTTTCTGTGGATAATGGCAGCTTCACTGTGAATCAGTAGTTAGATTAATCCTCTTTAACAAATCCTTGGTTTGCTTTTgtgaaaagaaactgaaaacGTGATACCAACAAGTGGCTAATACATTAACTGCTTTTAAAACATGCTGTGATACAAGGCTGTAAAACAATTCTTTGCAAACATTTTACCCTCTGCAACTAGAAA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU440499 True 367 lncRNA 0.37 1 7252811 7253177

Neighbor

gene id symbol gene type direction distance location
cnmd lect1 coding upstream 96784 7145434 ~ 7156027 (+)
si:ch211-199f5.1 pcdh8 coding upstream 108641 7140198 ~ 7144170 (+)
LOC113537654 NA coding upstream 196230 7050586 ~ 7056581 (+)
zgc:136472 LOC108258324 coding upstream 209270 7026750 ~ 7043541 (+)
fdx1 fdx1,LOC108259004,LOC100304958,LOC102789999 coding upstream 419560 6826302 ~ 6833251 (+)
LOC113537371 msl3,LOC107680330,LOC107742416,LOC107655940,LOC107752714 coding downstream 241681 7494858 ~ 7522309 (+)
LOC113537233 frmpd4,LOC108259089 coding downstream 272614 7525791 ~ 7599148 (+)
LOC113537525 prps2 coding downstream 350735 7603912 ~ 7617185 (+)
chst10 chst10 coding downstream 366933 7620110 ~ 7628422 (+)
lonrf2 lonrf2 coding downstream 387505 7640682 ~ 7663447 (+)
LOC117596122 NA non-coding upstream 17010 7226392 ~ 7235801 (+)
G371771 NA non-coding upstream 95623 7123079 ~ 7157188 (+)
G371752 NA non-coding upstream 169990 7081169 ~ 7082821 (+)
G371636 NA non-coding upstream 311829 6940698 ~ 6940982 (+)
G371517 eed non-coding upstream 581438 6669822 ~ 6671373 (+)
G371850 NA non-coding downstream 94960 7348137 ~ 7348338 (+)
G371898 arhgap6 non-coding downstream 224288 7477465 ~ 7478222 (+)
G372003 NA non-coding downstream 329175 7582352 ~ 7582551 (+)
G372048 NA non-coding downstream 366044 7619221 ~ 7619465 (+)
G372057 NA non-coding downstream 384010 7637187 ~ 7637439 (+)
LOC113537319 LOC108258902 other upstream 1683516 5560082 ~ 5569295 (+)
dmd LOC108258700,LOC107095375,LOC108439357 other upstream 2338964 4653715 ~ 4913847 (+)
mpc2a LOC108258922,LOC107564279,LOC107692629,LOC107665976,LOC108439361 other upstream 2703045 4536432 ~ 4549766 (+)
LOC113535386 LOC108258920 other upstream 2724295 4518121 ~ 4528516 (+)
spry2 LOC108259026 other upstream 2837912 4407472 ~ 4414899 (+)
G372351 u2af1,LOC102219527,LOC107380862,LOC103389252,LOC105917412,LOC101158751 other downstream 896783 8149960 ~ 8153855 (+)
LOC117596101 LOC103370040 other downstream 1212531 8465708 ~ 8470214 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other downstream 2585919 9839096 ~ 9876553 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other downstream 2959856 10213033 ~ 10259531 (+)
G373955 LOC108258951 other downstream 3752831 11006008 ~ 11009620 (+)

Expression


Co-expression Network