G371636


Basic Information

Item Value
gene id G371636
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6940698 ~ 6940982 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU440279
gatcattcaagatttttttccgactacatttctgctgtaaagttgatggttcaccactatccttccaggctttaataatgcactggacatttcataacccagttccagtgatttcagcaatctctttagttgttttctttgcttgatgcaggccaacaattttcccctttagtaacatcttttccacgaccatgggatacgtaatctgccatggttgtttaaaaaatgagaagctacacactgcatcagttaaggttaaaagaattgttgccagctgaaacatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU440279 True 285 lncRNA 0.38 1 6940698 6940982

Neighbor

gene id symbol gene type direction distance location
fdx1 fdx1,LOC108259004,LOC100304958,LOC102789999 coding upstream 107447 6826302 ~ 6833251 (+)
rpl24 rpl24,LOC107551103,LOC107575619,LOC107662676,LOC107751658 coding upstream 221600 6714654 ~ 6719098 (+)
LOC113537770 NA coding upstream 221872 6718694 ~ 6718826 (+)
tmem39a tmem39a,LOC107551106,LOC107662110 coding upstream 334433 6581418 ~ 6606265 (+)
ildr1a LOC108258875 coding upstream 359594 6572458 ~ 6581104 (+)
zgc:136472 LOC108258324 coding downstream 85768 7026750 ~ 7043541 (+)
LOC113537654 NA coding downstream 109604 7050586 ~ 7056581 (+)
si:ch211-199f5.1 pcdh8 coding downstream 199216 7140198 ~ 7144170 (+)
cnmd lect1 coding downstream 204452 7145434 ~ 7156027 (+)
LOC113537371 msl3,LOC107680330,LOC107742416,LOC107655940,LOC107752714 coding downstream 553876 7494858 ~ 7522309 (+)
G371517 eed non-coding upstream 269325 6669822 ~ 6671373 (+)
LOC117596116 NA non-coding upstream 303709 6625964 ~ 6636989 (+)
G371253 NA non-coding upstream 575710 6279825 ~ 6364988 (+)
G371279 NA non-coding upstream 647970 6291935 ~ 6292728 (+)
LOC117596159 NA non-coding upstream 708133 6223735 ~ 6232565 (+)
G371752 NA non-coding downstream 140187 7081169 ~ 7082821 (+)
G371771 NA non-coding downstream 182097 7123079 ~ 7157188 (+)
LOC117596122 NA non-coding downstream 285410 7226392 ~ 7235801 (+)
G371826 NA non-coding downstream 311829 7252811 ~ 7253177 (+)
G371850 NA non-coding downstream 407155 7348137 ~ 7348338 (+)
LOC113537319 LOC108258902 other upstream 1371403 5560082 ~ 5569295 (+)
dmd LOC108258700,LOC107095375,LOC108439357 other upstream 2026851 4653715 ~ 4913847 (+)
mpc2a LOC108258922,LOC107564279,LOC107692629,LOC107665976,LOC108439361 other upstream 2390932 4536432 ~ 4549766 (+)
LOC113535386 LOC108258920 other upstream 2412182 4518121 ~ 4528516 (+)
spry2 LOC108259026 other upstream 2525799 4407472 ~ 4414899 (+)
G372351 u2af1,LOC102219527,LOC107380862,LOC103389252,LOC105917412,LOC101158751 other downstream 1208978 8149960 ~ 8153855 (+)
LOC117596101 LOC103370040 other downstream 1524726 8465708 ~ 8470214 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other downstream 2898114 9839096 ~ 9876553 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other downstream 3272051 10213033 ~ 10259531 (+)
G373955 LOC108258951 other downstream 4065026 11006008 ~ 11009620 (+)

Expression


Co-expression Network