RNA id: TU439246


Basic Information

Item Value
RNA id TU439246
length 445
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G370811
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5252117 ~ 5252561 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaccacttgcctaatattgtgtaggtcccccttgtgctgccaaaacagctctgacccattgaggaatggactccacaagacctctgaaggtgtgctgtggtatctggcaccaagatgttagcagcagatcctttaagtcctgtaagttgtgaggtggggcctctatGGATAGGaatttgtcatgttcctcaaactattcctgaacaatttttgcactgTGGCAGGGCGTGTTATCCTGCTGAATGAGGTCACTGcaattagggaatactgttgccacgaaagggtgtacttggtctagAAGTAgcatctacatgaatgccaggacccaaggtttcccagcagaacattgcccagagcatgaCACTGCATCTGCtgacttgccttcttcccagaGTGCATGATGCTCACATGctcattgtaggcactttcagcggtggacagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577306.1 lncRNA upstream 135629 5113455 ~ 5116488 (+) True LOC117596136
TU439100 lncRNA upstream 135842 5113477 ~ 5116275 (+) False LOC117596136
TU439085 lncRNA upstream 149687 5091602 ~ 5102430 (+) True G370679
TU439092 lncRNA upstream 184696 5067122 ~ 5067421 (+) True G370685
XR_003403736.2 lncRNA upstream 199627 5048934 ~ 5052490 (+) True LOC113537232
XR_004577332.1 lncRNA downstream 13608 5266169 ~ 5269504 (+) True LOC117596163
TU439247 lncRNA downstream 13769 5266330 ~ 5268234 (+) False LOC117596163
TU439241 lncRNA downstream 18155 5270716 ~ 5337208 (+) True G370807
TU439243 lncRNA downstream 60016 5312577 ~ 5342477 (+) False LOC113537354
TU439242 lncRNA downstream 67201 5319762 ~ 5342477 (+) False LOC113537354
XM_026931781.2 mRNA upstream 15868 5198794 ~ 5236249 (+) True kpnb3
XM_026932321.2 mRNA upstream 64724 5137584 ~ 5187393 (+) False si:ch211-132g1.7
XM_026932320.2 mRNA upstream 64725 5137584 ~ 5187392 (+) True si:ch211-132g1.7
XM_034300090.1 mRNA upstream 64725 5140958 ~ 5187392 (+) False si:ch211-132g1.7
XM_034300138.1 mRNA upstream 338270 4653717 ~ 4913847 (+) False dmd
XM_026931967.2 mRNA downstream 110992 5363553 ~ 5381998 (+) True rcan1b
XM_026931969.2 mRNA downstream 111489 5364050 ~ 5381998 (+) False rcan1b
XM_026931968.2 mRNA downstream 111494 5364055 ~ 5381998 (+) False rcan1b
XM_034300241.1 mRNA downstream 146135 5398696 ~ 5407644 (+) True LOC113537535
XM_026932056.2 mRNA downstream 152478 5405039 ~ 5407644 (+) False LOC113537535
XR_003403795.1 other upstream 44386 5207595 ~ 5207731 (+) True LOC113537771
XR_003403598.2 other upstream 338270 4653718 ~ 4913847 (+) False dmd
XR_003403794.1 other downstream 1466133 6718694 ~ 6718826 (+) True LOC113537770
TU441073 other downstream 2897399 8149960 ~ 8153855 (+) True G372351
TU442162 other downstream 4586535 9839096 ~ 9876553 (+) True LOC117596102
TU442901 other downstream 5753447 11006008 ~ 11009620 (+) True G373955
XR_004577362.1 other downstream 8763962 14016523 ~ 14021131 (+) False gpalpp1

Expression Profile