ddx39aa (ddx39,ddx39b,ddx39ab,LOC100304672,LOC107708265,LOC100706537,LOC108428188,LOC107563747)


Basic Information

Item Value
gene id ddx39aa
gene name ddx39,ddx39b,ddx39ab,LOC100304672,LOC107708265,LOC100706537,LOC108428188,LOC107563747
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11354135 ~ 11360446 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932109.2
TGATTGACTTCGATTCTGGCCAATAGAATTAGAGGACATTGTTGCCTTGAACTTCCGGGAAATGGTATAAGGTTTGAGGCCTACCCACGAGAGTCGCCAGAGAGAAAGCCGCTCTATTCTGCCAACAGCGCACGCAACCATGGCCGAGAATGATGTTGAGAATGAGCTGCTGGActatgaggaggatgaggagccACAGGGAGCCCCCGAGAGCGCAGTTGCACCAGGCAAGAAGGAGGTGAAGGGTTCCTACGTCTCCATCCACAGCTCCGGCTTCCGAGACTTCTTGCTCAAACCCGAACTGCTCCGTGCTATCGTCGACTGTGGCTTTGAGCATCCATCCGAAGTTCAACATGAATGTATTCCACAAGCCATTCTGGGCATGGACATCCTCTGCCAGGCCAAGTCCGGTATGGGGAAGACGGCGGTGTTTGTGCTCGCCACACTACAGCAGATTGAGCCTGTGGATGGACAGGTCTCTGTGCTGGTCATGTGCCACACTCGTGAGCTGGCCTTCCAGATCAGCAAAGAGTACGAGCGCTTCTCCAAGTACATGTCCAGTGTGAAGTGCTCAGTGTTCTTCGGAGGCCTGCCAATCAAAAAGGATGAAGAGGTGCTGAAGAAGAGCTGCCCTCACATCGTGGTGGGCACACCAGGCCGAATCCTCGCCCTCGTCCGCAACAAGACCCTCAGCCTCAAAAACATCAAGCACTTCGTCCTGGATGAGTGTGACAAGATGCTCGAGCAGCTTGataTGCGACGGGACGTGCAGGATATCTTCAGACTGACCCCCCATGAGAAGCAGTGCATGATGTTCAGTGCTACGCTCAGCAAAGAGATCCGGCCTGTCTGTCGCAAGTTCATGCAAGACcctatGGAGGTGTTTGTGGACGACGAGACGAAGCTGACTCTGCACGGCCTGCAGCAGTATTACTGCAAGTTGAAGGACAGCGAAAAGAATCGCAAACTCTTTGACCTGCTCGATGTCCTCGAGTTCAACCAGgTGGTGATCTTTGTGAAGTCAGTAGCACGCTGCGTCGCTCTCTCTCAGCTGCTGGTGGAGCAGAACTTTCCTGCTATCGCCATTCACAGAGGCATGGTTCAGGAGGAGAGATTGTCAAGGTATCAGCAATTCAAGGATTTCCAGAGGAGGATCCTGGTGGCGACTAACCTGTTTGGCAGGGGGATGGATATTGAGCGTGTCAACATCGTCTTCAACTATGACATGCCTGAAGACTCGGACACTTACCTGCACAGGGTGGCTCGTGCCGGTCGATTTGGGACCAAAGGTTTGGCCGTCACGTTTGTGTCCGATGAGACGGACGCCAAGATCCTCAATGATGTCCAGGACCGATTTGAAGTGAACGTGGCTGAACTACCAGAGGAAATCGACATCTCTTCGTACATTGAGCAGTCCAGATGAATTGTTCCTGTAATCCCATAATGATTGTGGTGCAGCTGGCATCTTTGGATGATGGAAGAGAAGATGCCTCcgtattttattttgatatctGTTGACAGACCCCCTTTTCACCTTCCCATGAATTCTGTTATAATGTGTatcttaaaatgtgtttattttattgcagtCTTGGGGGGTACTTTTATAATTTCACTTGTTAATTGTTGATGTTCATTGGTTTGagaattaaaactttttttttttttttt

Function

symbol description
ddx39b Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in mRNA export from nucleus and mRNA splicing, via spliceosome. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human DDX39B (DExD-box helicase 39B).
ddx39ab Enables RNA binding activity. Involved in mRNA splicing, via spliceosome. Is expressed in several structures, including eye; heart tube; immature eye; liver; and trunk musculature. Orthologous to human DDX39A (DExD-box helicase 39A).
ddx39 ATP-dependent RNA helicase DDX39

NR:

description
PREDICTED: ATP-dependent RNA helicase DDX39A-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12812 DDX39B, UAP56, SUB2; ATP-dependent RNA helicase UAP56/SUB2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932109.2 True 1671 mRNA 0.50 10 11354135 11360446

Neighbor

gene id symbol gene type direction distance location
LOC113537603 LOC108258484 coding upstream 59373 11284173 ~ 11294762 (+)
zgc:101679 zgc:101679,f8a1,LOC108258498,LOC108428241,LOC107551875,LOC107676892,LOC107712230 coding upstream 79693 11269535 ~ 11274442 (+)
si:ch211-243a20.4 NA coding upstream 85984 11260728 ~ 11268151 (+)
grin2bb grin2b,grin2bb,LOC108258482,LOC107676879,LOC107551907,LOC107692185,LOC107603025,LOC107712222,LOC107718709 coding upstream 112556 11139389 ~ 11241579 (+)
atf7ip atf7ip coding upstream 224620 11084542 ~ 11129515 (+)
LOC113537508 psmb8,psmb8a,LOC108258500,LOC108258501,LOC107694758,LOC107549856,LOC107554342 coding downstream 33220 11393666 ~ 11397380 (+)
LOC117596185 LOC108258488,LOC108258487 coding downstream 50600 11411046 ~ 11416417 (+)
LOC113537560 NA coding downstream 59435 11419881 ~ 11422752 (+)
LOC113537723 NA coding downstream 68268 11428714 ~ 11434601 (+)
raph1b raph1b,LOC108258483,LOC108435976,LOC107707841,LOC107654246,LOC107588825,LOC107556694,LOC107719733 coding downstream 113656 11474102 ~ 11539378 (+)
G373997 NA non-coding upstream 74021 11279816 ~ 11280114 (+)
G373982 NA non-coding upstream 218199 11135553 ~ 11135936 (+)
G373975 NA non-coding upstream 263030 11070122 ~ 11091105 (+)
G373939 LOC107692181,LOC108428230,LOC107712223,LOC107603033,LOC107676851,LOC107561874 non-coding upstream 388980 10961739 ~ 10965155 (+)
G373934 NA non-coding upstream 402655 10948931 ~ 10951480 (+)
G374262 NA non-coding downstream 47809 11408255 ~ 11409661 (+)
G374293 NA non-coding downstream 112253 11472699 ~ 11472973 (+)
G374296 NA non-coding downstream 134659 11495105 ~ 11495467 (+)
G374299 NA non-coding downstream 153905 11514351 ~ 11515525 (+)
G374251 NA non-coding downstream 233519 11593965 ~ 11594922 (+)
LOC113537724 sept3 other upstream 286133 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 344515 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 1094604 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 1477582 9839096 ~ 9876553 (+)
LOC117596101 LOC103370040 other upstream 2883921 8465708 ~ 8470214 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other downstream 749125 12109571 ~ 12126195 (+)
gpalpp1 gpalpp1 other downstream 2656077 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 2662804 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 2998296 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 3719241 15079687 ~ 15099905 (+)

Expression


Co-expression Network