RNA id: TU442959


Basic Information

Item Value
RNA id TU442959
length 299
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G373997
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11279816 ~ 11280114 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATTGCATCTGAAAAGACCCCTGGATTTTATTTTCCGGGGCAGAAAAATGCCCTTATTACCCCCTATAGGATCCAAAACGCAGTCTCATCTCTAGCTGCTTTAACTTCCAGTctttttatccatccatccatccatccatgctgGCGTTATGTTTAGGAGTTTGGCCCCAGCAGCAAAAACTCCACACTGATGCTTTAATCATAGACTGAGTACTGAGAGGTAGCCTGCTTGTTTCAGCGTGTTTATAACAAACCAGCagcttcactcacacacacacactcacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442943 lncRNA upstream 143880 11135553 ~ 11135936 (+) True G373982
TU442932 lncRNA upstream 188711 11070122 ~ 11091105 (+) True G373975
TU442930 lncRNA upstream 215781 11062016 ~ 11064035 (+) False LOC113537724
TU442882 lncRNA upstream 314661 10961739 ~ 10965155 (+) True G373939
TU442877 lncRNA upstream 328336 10948931 ~ 10951480 (+) True G373934
TU443267 lncRNA downstream 128141 11408255 ~ 11409661 (+) True G374262
TU443302 lncRNA downstream 192585 11472699 ~ 11472973 (+) True G374293
TU443305 lncRNA downstream 214991 11495105 ~ 11495467 (+) True G374296
TU443308 lncRNA downstream 234237 11514351 ~ 11515525 (+) True G374299
TU443254 lncRNA downstream 313851 11593965 ~ 11594922 (+) True G374251
XM_026931712.2 mRNA upstream 5374 11269535 ~ 11274442 (+) True zgc:101679
XM_026931739.2 mRNA upstream 11665 11260728 ~ 11268151 (+) True si:ch211-243a20.4
XM_034300015.1 mRNA upstream 11665 11260902 ~ 11268151 (+) False si:ch211-243a20.4
XM_034300016.1 mRNA upstream 12607 11260900 ~ 11267209 (+) False si:ch211-243a20.4
XM_034300349.1 mRNA upstream 38237 11139389 ~ 11241579 (+) False grin2bb
XM_034299984.1 mRNA downstream 4059 11284173 ~ 11294762 (+) False LOC113537603
XM_034299985.1 mRNA downstream 4059 11284173 ~ 11294762 (+) False LOC113537603
XM_034299983.1 mRNA downstream 4060 11284174 ~ 11294762 (+) True LOC113537603
XM_026932109.2 mRNA downstream 74021 11354135 ~ 11360446 (+) True ddx39aa
XM_026932012.2 mRNA downstream 113552 11393666 ~ 11397380 (+) True LOC113537508
TU442901 other upstream 270196 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 1403263 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 3125961 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 4560990 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 6072085 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 2736409 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 2743136 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 3799626 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 3834358 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 4069140 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile