RNA id: XM_026932351.2


Basic Information

Item Value
RNA id XM_026932351.2
length 2433
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC113537723
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11428714 ~ 11434601 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCTATCAAGAAAGTTTTCCGTTTCTTTACGAAGTTAACTTCTCTTAAAACTAAAAAAGTGATAGATTGCAATCATCCAGCAAACGACCCACTCTTAACTGAGACCTGTGTAGAGGCATCCTGCTCCTTCACTAGAAGACAAAGCAAGGAGAATtctctaaaaagaaaaaggatggaTGTTCCTTATGAAGGACCTGAGCCCCAACCTGAGGAGACACCGGAAAAAAGgaggagaacagagacagaagagaatGATGTGAACAGAGAAAAGACTACGAATGAGTCAAAGGCATCCTGCTCCTTTGCTAGAAGACAATGCAAGGAGAAtcctctgaaaagaaaaaggatggaTGTTCTTCACGAAGAACCTGAGCTCCAGCCGGAGGAGACAGcagaaaaaaggaggagaacagaaacagaagagaAGGGAACACAGCCTGTTAGAAGAATCAACGCTTTTCGAATCGcaaagtTTCGTGGACGCTACATTATGAAAGAGCTGCTGGGTAGAGGAGCCTACGGTTACGTCTACGCAGGTGTCCGGAAGTCGGATGGGAAAAAGGTGGCCCTGAAATTTGTGCTCAAAGGAGGAAATGAACCATTTATCACTCTTCCCGGTGACACACGCAGACTCCCTGTTGAAGTGGCGCTAATGGAGCTTGTGTGCAAGACGCCTCGCTGTCCATATGTGATAGAGCTGCTGGAATGGTTCGAGACACCCACATCCTTCATCTTGGTCCTGGAGCGGCCCGACCCCTGCATTGATCTCTACAAGTACTGTAGATTTCTACGCAAGAAAGTGCCTGAATCTCTGGCTCAAATCATCATGCAGCAGGTAGTTCGAGCTGCATGTCACTGCCGTGACCGGGGTGTGCTCCATCGAGACATCAAGGAAGGAAACCTTCTCCTGAACCCTCAGACTCTTGAAGTGAAGCTGATCGATTTCGGTTGTGGTGAGCTGCTTAAGGACACCCCCTACAAGGAATATGCAGGCACGCGACGTTACTTCCCACCTGAATGGATTGTTGGAAAAGAGTACAATGCCGAACCTGCTACCGTCTGGAGTCTGGGCATACTCCTGTACAGCCTGTTACATGGAGAAGAGCCTTTTTTTGGAGCACAAGAGATTGTTGATGGCGACCTGTACTTCACTGATGACCTGTCTGAAGCCTGCTGGAGTCTGATAAGGTGGTGTCTGCAACGGGACCCTCAAAGAAGACCGACCCTGGAGCAGATCCTCACACATGACTGGTTCTGAGGCCAGACTCCTTACCTAAGCACCCTGGGGTCGCCGTGGGGTGGTGAGAATCTCCTCAATGCCTTCTGTGTGTGCTGAAACGTTCCAACAAAACCATGAAGTGGCGCAAGTTTTGATTGCATGCATAAACTGGCAGAAGAGTTGTGTCGATCAGCTCCCTCACAATGGGACAACACCAGATTGGAGTATTTGTTCCACTACTAGCAGTAGAACCGCTAAGGTACTGCAACTGCGTGCCATATGTGATACAGTAGAACATCTGTGCACacgaacacagagagagaaccaGACCCAGTGTGGAGAATGAAGGGTAAAGGGATGGGTGTTATCCTGTTAACGTAGCAGGCCCAGCAGCGAACAGCGCACGGTGCAATGAGGGGGAACCCACTCAAGCGGGTTTGGGGGGAGAATAAAGGCTAAAGAGAGGGTGTGTGGCAATCACACTCAAGTAGATAATTCTGAGGAACAGCTCAACCTAGCAGAGAGATGATGAAAGAGTGGAGGGAACCTGAGTTCAGCCCCAGTATGCGCGTTTGCAGAGTCCTGCTACATAAAGTTGATTTTGGGAGTAAGTGTGCGGTATGGCACGAGGGCACCACTCAGCCACCACTCGCAGCACTTATTAACAGGCTTGAACAGTGGTAGGtagagttacacacacacagaagaaggTAACTGGTTGATTTTCACTGCCCCTGGTGTCTAGGAGGGATGAAAAAACATCCATGAATTCATCCCTGAGACAATAATCTTCATTGCTGTGTATTGGCCATGTCTGATTTCTTATAGTAAATAAGTTCAGATGAAACCTATACTAACTTGATTTTCAGATGTGCTGGCCTTcttcaagtgattttttttttttgacggCAGAGACAGACATTTGCAATATTACAAATGCAGTTTGTAAAATCATTTCAAACCTTTTGAAAGCTTTGTGTGATTTGAAATATTACCCTGCAGTGGATATGACTAGTTTCTTCAATTcaggtttacatttacatttttgtataaatatgagtcatgtaaaaaattacaaactgcacttTTAAATCTAACAGGCAAAATAATCATGTGACACAATAATACTACACGAATAAgtcttttatttagatttacacaaataaacatttcagtacATTTCATTACAACATAAAACTATACATACATAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443267 lncRNA upstream 19053 11408255 ~ 11409661 (+) True G374262
TU442959 lncRNA upstream 148600 11279816 ~ 11280114 (+) True G373997
TU442943 lncRNA upstream 292778 11135553 ~ 11135936 (+) True G373982
TU442932 lncRNA upstream 337609 11070122 ~ 11091105 (+) True G373975
TU442930 lncRNA upstream 364679 11062016 ~ 11064035 (+) False LOC113537724
TU443302 lncRNA downstream 38098 11472699 ~ 11472973 (+) True G374293
TU443305 lncRNA downstream 60504 11495105 ~ 11495467 (+) True G374296
TU443308 lncRNA downstream 79750 11514351 ~ 11515525 (+) True G374299
TU443254 lncRNA downstream 159364 11593965 ~ 11594922 (+) True G374251
TU443400 lncRNA downstream 165756 11600357 ~ 11600564 (+) True G374377
XM_026932102.2 mRNA upstream 5962 11419881 ~ 11422752 (+) True LOC113537560
XM_034300380.1 mRNA upstream 12297 11411046 ~ 11416417 (+) True LOC117596185
XM_026932015.2 mRNA upstream 31334 11393700 ~ 11397380 (+) False LOC113537508
XM_034299974.1 mRNA downstream 39501 11474102 ~ 11539378 (+) True raph1b
XM_034299973.1 mRNA downstream 39501 11474102 ~ 11536549 (+) False raph1b
XM_026931798.2 mRNA downstream 118548 11553149 ~ 11560254 (+) True cpb2
XM_034300173.1 mRNA downstream 127407 11562008 ~ 11577797 (+) True zc3h13
XM_026931960.2 mRNA downstream 143823 11578424 ~ 11593890 (+) True tm9sf2
TU442901 other upstream 419094 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 1552161 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 3274859 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 4709888 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 6220983 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 2581922 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 2588649 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 3645139 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 3679871 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 3914653 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile