RNA id: XM_026932257.2


Basic Information

Item Value
RNA id XM_026932257.2
length 2009
RNA type mRNA
GC content 0.44
exon number 10
gene id sept3
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11068009 ~ 11079689 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACGAGGCAAGTGTTTGCCTCTCACTGCCGCAGCATACACCAAAATGAGCAATATACTGACATGCGATCGAGTAAATATGAGCTAAAGAGGTGGCACACATGTAAACAGGATGCACATGAGAGTGCAACATGGGAAAAAGCTGTAAAATACATGTCAGAAATCGTGCCCCCGGAAGTGAGACCCAAACCTGCCGTCCCTGCCAAGCCATCTCATGTGGTACCACCCACCAGCATCCCCCCTGCGCCCCTCCAGGGCTCAGGGGCTGGAGGTCAGGGGTCAGGAGGAGGCTCAACATTGCTGGGATATGTTGGGATAGATACCATTATTGAACAGATGAGGAAGAAGACCATGAAGACTGGCTTTGATTTCAACATCATGGTTGTAGGTCAAAGTGGCTTGGGGAAATCCACCATGGTGAATACTCTATTTAAGTCTCAGGTGAGCAGGCGGAGCTCTGGCTGGAGTCGTGATGAGAAGATCCCCAAAACTGTGGAGATTAAATCTGTGTCACATGTGATAGAGGAAGGTGGTGTGAAGATGAAACTGACAGTGATTGATACTCCAGGATTTGGGGACCAGATCAACAACGAAAACTGCTGGGAGCCAATATCTAAATATATCAATGAGCAGTATGAGAAGTTTCTAAAGGAGGAAGTTAACATTGCCCGTAAAAAACGGATTCCGGACACCCGAGTGCACTGCTGCTTGTACTTCATATCTCCAACTGGACACTCACTGCGGCAGCTGGACATTGAGTTCATGAAGCATTTAAGTCGAACTGTGAACATCATTCCTGTCATTGCCAAAGCGGATACTCTCACTCCTGAGGAAAAAACAGAGTTCAagcagagaGTGAGGAAGGAGCTGGAAGTGTGTGGAATCGAATTTTATCCACAAAAGGAGTTTGATGAGGACCAGGAGGACAAGGCTGATAACGATAAGATCAGGGAGGCCATGCCTTTTGCAGTAGTGGGAAGTGACAAAGAGTACCAAGTCAACTGCAAACGGGTTCTGGGTCGGAAGACTGCCTGGGGAATAGTAGAAGTTGAGAACCCAAATCACTGTGAATTCTCTCAACTACGGGATTTCCTGATCAGGTCTCACCTCCAAGACCTGAAGGAGGTCACCCACAACATCCACTACGAGACGTACCGGGCCAAAAGGCTCAATGACAATGGAGGACTCCATCCCATCTCAACCAGCAACAGCACACAGGAAAGCAACCTGTAAGGGGGAAACAGTGAATGAGAGAATGATTGAAGCGAGGTCGATAATGAAAGATgataacaaataatatttttgcgGATAAATACATTAGCACGTGCCCTTGTGGAGTTCATCTTAAAGCTTTTTATCCATCTGAGCATGTTCGTCGTTGCCTCTCTTTTTGCAAACCATCctttttaaaacacataatGACAGCACATCAACCTAAGAGGGAGACTGGCTGAAACGTTCATGAGCATAGCCTCTAGATATTACAGTTAACTTGCCACAGTATAGATGGATGACAGCACTGCCATTCAACTGCACACAATACATAGGAGTTTATAAATCTTTGTGTGAAGTCTCCTTTGTGTGATCATTTTCTCTAATAGGTTTTATTCTCTACCTGCCAAAACAATTCAGAACTCAGAAACGTtgacgatttttttttttttgcactttgacGATAGTATATTGATGCGCTCCTGTTTAACTATTcctaaacacactgcagcattTACCACTGGCTGCATGTTTTACGTAGCTTACCCAAATGACTAATGATCCTTTTGGGCACCAGTTCAGGACTTTCACATTATCCAGAATAGCACACCAAGTACTAAGCAGAAATCTTTGATTCCTCTCAACTCAAGGTTTTTGAAGGTTTATCCCAATACATTTTGTAAACATGTTTCTAGACTGTGtgtgcacaagtgtgtgtgtgtgtttgtgtttgtgtatgagaGAATGTGCCTTTATATCTTTTAGCTCCATCTTTCCAGTGTTCAAGCAACTCAAAAAA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442930 lncRNA upstream 4767 11062016 ~ 11064035 (+) False LOC113537724
TU442882 lncRNA upstream 103647 10961739 ~ 10965155 (+) True G373939
TU442877 lncRNA upstream 117322 10948931 ~ 10951480 (+) True G373934
TU442861 lncRNA upstream 134999 10929744 ~ 10933803 (+) True LOC113537644
TU442943 lncRNA downstream 55864 11135553 ~ 11135936 (+) True G373982
TU442959 lncRNA downstream 200127 11279816 ~ 11280114 (+) True G373997
TU443267 lncRNA downstream 328566 11408255 ~ 11409661 (+) True G374262
TU443302 lncRNA downstream 393010 11472699 ~ 11472973 (+) True G374293
TU443305 lncRNA downstream 415416 11495105 ~ 11495467 (+) True G374296
XM_034300343.1 mRNA upstream 800 11062304 ~ 11068002 (+) True LOC113537724
XM_026932291.2 mRNA upstream 9304 11053094 ~ 11059498 (+) True serhl
XM_026931665.2 mRNA upstream 67232 10996931 ~ 11001570 (+) True c26h19orf67
XM_026931817.2 mRNA downstream 4853 11084542 ~ 11129515 (+) False atf7ip
XM_026931816.2 mRNA downstream 4855 11084544 ~ 11129515 (+) False atf7ip
XM_034300175.1 mRNA downstream 4859 11084548 ~ 11129514 (+) True atf7ip
XM_026931812.2 mRNA downstream 4859 11084548 ~ 11129514 (+) False atf7ip
XM_034300178.1 mRNA downstream 4859 11084548 ~ 11129514 (+) False atf7ip
TU442901 other upstream 59182 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 1192249 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 2914947 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 4349976 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 5861071 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 2936834 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 2943561 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 4000051 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 4034783 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 4269565 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile