RNA id: XM_026932272.2


Basic Information

Item Value
RNA id XM_026932272.2
length 8187
RNA type mRNA
GC content 0.47
exon number 16
gene id grin2bb
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11139389 ~ 11241579 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTATAGGGAAGAAAAGGTCTTTCACCCAAAAACCTACTTCTCAAGCCTGACGTGTGGGAAGAACAGAGATCGGGGTTTGCTGGGGAAATGCTTGTATTAGTTCCAGAAGTAATGAAACATGCAGAGATTGGCATCAGGACTGCGTCTTCACTTCACTGCCATGCTTGTCAGCCTCGGCCTCTTTCCCTCCTTCCGCCGTACCCTCTCCTCGCCCTCCGTCCTCCCTTCACCTTCCAGACTCCCTCTTTTCTCATTTGTGCTCCTCGTGTCGCTGCTCCTCTTCCCAGCTTGCGAGTCGCGACGGGGCGGTGGGGGCATGGCTGGGGGAGTGGCCACTGGCAACATCATTGGGCCTCCCCATTACTCTCCACCAAATCCGGTGGCATCAGTGCCCAAGTTGGCGCAGGGCCTTAGCATTGCCGTGGTGCTTGTGGGCAACTCGAGTGAGGTGGCGCTGGCTGAGGGCCTGGAGAAGGAGGACTTTCTACACGTACCGCTGGCACCCAAGCTCGACCTGGTCACCATGAATGAAACAGACCCAAAGAGCATCATCACGCGCATATGTGCGCTCATGTCCCGCCACTGGCTCCAGGGCGTCGTGTTTGGAGATGACTCTGACCACGAGGCCATCGCCCAGATCCTTGACTTCATCTCAGCGCAGACCCACATCCCCATCCTGGGCATCCGCGGAGGCTCCTCCATGATCATGGCTGCCAAGGATGACAACTCCATGTTCTTCCAGTTCGGGCCATCTATAGAGCAGCAGGCTTCCGTCATGCTCAACATCATGGAGGAGTATGACTGGTACATCTTCTCCATCGTCACTACCTACTACTCGGGGTACCAGGACTTCGTCAACAGGATCCGGAGTACCATAGAGAATAGCTTTGTGGGCTGGGAACTGGAGGAGGTGTTGCTGCTTGATATGTCAGTAGACGACGGTGACTCTAAAATTCAGAACCAGCTGAAGAAGCTCCAGAGCCCCGTTATACTGCTCTACTGCACTAAAGAAGAGGCCACCACCATTTTTGAGGTGGCGCATTCCGTCGGCCTCACTGGATACGGTTACACCTGGATTGTACCATCGCTGGTAGCAGGGGATGCCGACAACGTGCCCAATGTCTTTCCTACAGGTCTGATCTCGGTGTCCTATGATGAGTGGGACTATGGACTGGAGGCGCGTGTGCGTGATGCTGTGGCAATCATCGCCATGGCAACCTCCACCATGATGCTGGACAGAGGCCCCCACACACTGTTGAAGTCAGGTTGCCACGGTGCTCCTGAAAAGAAAGGCCCGAAGGGGGGGAACCCCAACGAAGTTCTGAGATACCTCATGAATGTGACATTTGAGGGCCGCAATCTCTCCTTCAGTGAGGATGGCTACCAGATGCACCCCAAGCTGGTTATTATTTTGCTGGATAAGGAGAGACAGTGGGACAGGGTGGGTAAGTGGGAGAATGGCTCGCTGACCATGAAGTACCATGTGTGGCCACGCTTTGAGCTCTATTCAGATGCAGAAGAAAGGGATGATGACCACCTGTCTATCGTCACACTGGAGGAGGCCCCGTTTGTCATCGTGGAGGATGTGGACCCCCTCAGTGGCACCTGCATGAGGAACACGGTTCCCTGCAGAAAACAGCTCAAAGCCCAaaaccAAACAGGAGATTCAGGGATCTATATCAAGCGCTGTTGCAAGGGCTTCTGCATAGACATCCTCAAAAAGATCGCTAAATCTGTGAAGTTCACCTACGACCTCTACCTAGTGACCAACGGGAAACATGGCAAGAAGATCAATGGCACATGGAACGGCATGGTGGGCGAGGTGGTGTTTAAGAACGCTCACATGGCAGTGGGCTCTCTGACCATCAAcgaagagaggtcagaggtcattgACTTCTCCGTCCCCTTCATAGAGACGGGCATTAGTGTCATGGTCTCACGTAGCAATGGCACCGTGTCTCCTTCTGCATTTCTAGagcCGTTCAGTGCTGATGTGTGGGTGATGATGTTTGTGATGCTGCTGATCGTATCTGCCGTGGCCGTCTTTGTCTTTGAGTACTTCAGCCCGGTTGGCTATAACCGCTGTCTGGCAGATGGACGAGAGCCAGGTGGTCCCTCATTCACAATCGGAAAGGCCATATGGCTGCTCTGGGGTCTAGTCTTCAACAACTCTGTGCCTGTACAAAACCCCAAAGGCACCACCAGTAAGATAATGGTATCAGTGTGGGCCTTCTTCGCTGTCATCTTCCTGGCCAGTTACACTGCCAACCTGGCTGCCTTCATGATCCAAGAGGAGTATGTTGACCAGGTGTCTGGCCTCAGCGATAAGAAGTTCCAACGGCCAAATGACTTTTCTCCGCCGTTCCGTTTTGGCACGGTTCCCAATGGCAGCACGGAGAGGAACATTAGGAACAACTACAAAGAGATGCACAGCTACATGACCAGCTTCCACCAGAAAAACGTAGATGAGGCCCTTCAGAGCCTGAAAACAGgAAAATTGGATGCATTTATCTACGACGCTGCTGTGCTGAACTACATGGCAGGCAGAGATGAGGGCTGCAAGCTTGTGACAATCGGTAGTGGTTATATCTTTGCTACCACAGGCTACGGCATTGCCATCCAGAAAGATTCTGGTTGGAAGAGACCTGTGGACCTTGCCATTCTGCAGCTGTTTGGAGATGGTGAGATGGAGGAGCTGGAGGCACTGTGGTTGACTGGGATTTGTCACAATGAGAAGAACGAGGTAATGAGCAGCCAGCTGGACGTCGACAACATGGCCGGCGTCTTCTACATGCTGGGGGCAGCCATGGCGCTGTCACTCATCACCTTCATAGCTGAGCACCTGTTCTACTGGCAGCTACGCTTTTGCTTCATGGGCGTGTGTTCGGGCAAGCCCGGCATCACCTTCTCCATTAGCAGGGGCATCTACAGCTGCATCCATGGTGTTCAGATCGAGGAGAACAAATCAGGCCTCAACTCTCCATCAGCCaccatgaacatgaacatgaacaacacCCATTCTAACATCCTTCGCTTGCTGCGAACAGCAAAAAACATGACCTCTGTGCCTGGGGTCAATGGATCCCCCCACAGTGCCCTGGATTATGGCCACCGTGAGTCGGCTGTCTATGACATCAGTGAGCATCGACGCAGTCTGGCAGGCCACAGTGACTGCAAGCCCCCACCCCCATATCTGCCAGAAGATAATATGTTCAGCGACTATGTGAGTGATGTGGAGAGGACTTTTGGGAACATGCACCTGAAGGACAGTAACCTGTACCAGGATCATTACCTGCACCACCATGGGGGCACGGGATCCGGACTGGCTCTGGGTATGTCGGGTCCCTTGCCTAACCGACCTCGTAGCTTAGGCAGTGCCAGCTCATTGGAGGGAGGGATGTACGATTGTGACAGTTTAGGGGGAGGGGTAGCGCCTATTTTCACCACCCAGCCCCGCCAGTCGCTGACTCACAGGAACAGGGAAAAGTTTGACCTGATTGCAGGCCACCCCACCCAATCGAGCTTCAAGTCTGGCCTGCCTGATCTATATGGGAAGTTTTCCTTCAAGGGTGGGGCGTCCAGTTCAGGGTTTATCGCGGGACATGACAGGTACTGTGGGGGAGGAGGGGCGGGCTCGGGAGGGGATGACGGAAATATCCGTTCTGATGTGTCAGATATTTCCACTCACACCGTGACGTATGGAAATCTCGAGGGCAACGCTAAACGACGCAAGCAGTACAGGGACAGCCTGAAAAAAAGGCCAGCATCTGCCAAGTCACGCCGGGAGCAGGATGAAATTGAGCTGGGCTTCCGGAGGCGCACCCACCACAccatccaccaccaccaccaccaccatcatcctgTTACACAAGGGCACCGTTCAGCTACCCCACCTGTGGAACGCAAGAGCCTGAGAGGGGGCAACTCCTCATACATGTTCCGTGACAAAGATAATCTGAGGGACTTCTACATTGACCAGTTCCGATCCAAGGAAGGGGCATCCCAATGGGAGCACTTGGATTTGAGTGATGCTCCCGGAATGGGTGGCGGAGGGGGTCTGGGTGGGGGCGGATGTGGCGGCATAGTCAGCAGTGGTGGTGGCGGGGGAGCGTGCACTAGTTTGGTTCCTGTGGACGATTTCTTGAAAGGTAAATCCAAGAAGACAGAGTGTAAGGGTGGAGTGGGAGGATCTCCTGGGCAGCAGGGCCATGCATGCTGGGAAAAGAACATTGGAGGGGTGGGGGGTTTGGCCGGAGGGGATTGGGAATGCCGTAACTGCCATAGTGGAGGCAACAAGCCCGTTTGCATGCATGGGGGAGGAGGGGGTGTAGGGGGATCAAGTGGAGGAGGTGGGGGTAGTGGACAAGCCTCCAGCCGGCCAAGCTCAGCCACATGCAAGCGATGCGATTCATGCAAGAAGCCAGGCAACTTGTATGACATCAGTGAGGACAACCACCTCCTCCTGGATCAGATAGGGGGCAAGTTCCCCTTGGAAGGTGGGAAgggaggtggtggaggtggaggggcCCAAACCCAGGTGCAGAGGCGCAAGTTTGGCCCAGGGGGCAGGGTGTTGCGTAGGCAGCATTCCTATGACACATTTGTAGACCTGCAAAAAGAAGGGGCGGGTAGGATGGGAGGCTCTGGAGGGTTTGGAGGAGCATCTATGCTTCCTCAGCCCCGGAGTGTGAGCCTGAAAGACAAAGATCGCTACATGGAAGGTGCAAGCCCATATGCCCAGATGTTTGAGCGGTATATGGGAGGGGAGCGGGAGACTACGTTTTTTAGTGGTGGGGACCGGGGGAAGGGAGGTGGCTCATCGTTTAACTTGTTCCGTGGGGGTGAGGGTGGGTTGCACCGTCGCTCGGTAGGCGAAAGAGACATGAGGGACAGGGATAGAGGCATGATGGGAGGAGGTATGGGAGGTACCCGAGGGGTTGGGACTTACTCCTTGTCTAAATCTCTCTACCCAGATAAGGTGAACCAGAACCCATTCATCCCAACCTTCGGCGATGACCAGTGCCTATTACATGGCGCCAAATCGTACTACATCAAAAAGCAGCAGGCACAGCCACAGCAGCAACAGAcgcaacagcagcaacagctcctcaacaacaacaaccggGCAGACTTCCGCGGCTCCATGGGGGTGACTTCTTATTTGCCAGCCTCTGCCTCTGCCGGGGTTTTGTCCAACGTGGGACCCCGTTTTCCCAAGGAGCTGTGCCTGGGTGGGCCCCTCAGCAACCACCATGGAGGGGCAGCAGGCAACAACAAGCTGCTGTCAGCAAGGGACGGGTTAGGGATGGGGCAAGGACAGAGACCTTTCAATGGCTCAAGTAATGGACACGTATACGAGAAGCTCTCCAGCATTGAatctgatgtctgatgtttaTGTgcaagtgagagaaagaggcagaaagagagaaacataaAGAGAGAAATGTATTTCAAAAGCAAGGAGGCAGCAGACTAAGGTAATGACCAACAGATCGTGTCTACTTTGTAATTTCACTTTCAAAACCAAGAAAGCAAGCAAGAGGAACTCATCAATGCTTGATACAGGTGGACGTAGCACTGTTGGATCACTGTAAATAGAGAGAAGGGACCTGCTCACAAGACAAAAGCTCAGACCAGATAGTGACAACCTCAGTATATCCCGCTATTTTATCctctcttctttttattatcCCTTCTATTTTTCTGCTCCTTATACCAAAACACAATGTCCGATCCAGCTTAGGTACAGAGACCTGGTACGATCGTGAAGAGAAATCAGTTATTGTCTAGAAACAACAGGGTAAACCTTACAATAATTGTATTGATGATGTTAACACTAATATTATTAGATATGATTATAATGTTTATGATGTTCAGTTTGGGATTGATTTCTGTATGTTATATGCTGTAATATCTTTGTACTCTGCTTACAATTCTTTGTTAGCATACTACTTTTCAGAGAATTCTTATTTCATCATGGGCTGTCATTTGATCGTATTTGTCAACTGAGCTTGCATTGTCTTACATCATCATGCCATTTTGCCCTGATCTGGAACTCCAGGACCGCCAGGGACAATGCCaagctggaaaaaaatgtagacaaacttgttttcctttcagctttatttactattaattattcatgtttatttcatttattgagTGCTGTAAAATTATATGTAAAAGGCATGATTTGCAAAGTACTTAAGTTGTACTCCAGATATTGTGCTGAAGGACAATTATTATGATCTCTTTTTATGGctttacaatttttataatGTTGCATTCATGTCAGTAGAGCGTTGGTTTAGTACACAGCACATTATGTGCCTTAGCAGGAGTCCCAGAATTCTAATTATACAGGTCATGTTGTTATGGCATCTTTCTGGTCACTGCACACAGATTGGTCATTGGATGAGTATCCATGATTCTAGATCGTTATTTGTGATAAAGACGCCTGATATGGAATTGCAATGTCCAATTACGTGCAGAGACACAACACAATCATAAATTGTATGATTGTGTAGCACGGATTTGAATTCAGAATTATTGTTTTACAAAATTAGTTTTGAACTGAATTTGCACAGCTCTGCGTGAAACCTGTTCTATAGATAAcaactttcatttatttagtgcaTTTATTAGACTTAAAAATCAGACAGGAGAAATACCTGGGATGTCTTATATATTTGAATTGAGTTGCAGGATGTTAGTTCAAATACTGGACAAACAAccatcaatcaattaattatttttccacacttggttttgaattaatttttttccctttctttttgtGCACCCTTAGGTAAGAATGAGATGGGTGTTACAGGATATTACGAAAGAGCTTTGCCATGGCATCTGCTTGTATTTTATAAGTGTAAATATCCTTTTTTTCCATAGTGTACAGTGAGAATACAGCAAAGATGTAAGTTTAGAAATGCGTTTTACTTAATTagatatgaaatgaaattagaATATTTGCACAATTCAACCTGGCCAAAAATGATGACTGCAGAGAACATCAAAATTATAATATGATAAGTACAAATGTTACTTATTTCTTTACTATCACTACGTGTTTTCACAGACGGCACCCTGACTAGCTCTGGGAGGCAGAATAATCTTTCTTGCTTATATAACAGTTAAATAAGTGCTGTTCTGTCAAGAACacccttctgttttttttttttgtttttaattccaAGTCAAATATGTTGCAGTGAAGCTTActaatcaaattaaatgttatagacTTAATCATTTATGTATATTAATCCAACCACTCTTGGACAACCAGCAATAGTCTATAACTAGTCAGGATTACTTCTTACATGCAGAATTGAGGTATTTTTGGCTAGTATTACATGGATTGGACAAAAATTACACTTAGTCAACTTTCTAACTAGccaattatttaaatagattaaTCAGTAAATTTGGTCATTTAGTGGTATAATCACTAGTCTGTGccatatttacttttttaatcccACCAATGAACATATAAACTTTGCTGGTGGTCCCTAAAACCCTATTCTTTTCCCATATACCTATATAGCTCTATAtgagtttgttttgtgtgtgaaatatacattttctttattcacattttataaaaaatactcTCAGCCAAACAGATCTCCAATTCAAGcacaatgtttatattaataattgctGTGTAAATATCTATTTTGTGGTCTTTAAGAAAACACCACTTTTATTGCCAcacttattcatttttttgctaagtgtgtgagagtttgtgAAACCGTGAGTACATTATGAGATACATGCATgcatctttctttctattttgcattccaGCTTTTAGATTATGTATAATTCAAAGACcatgtttagtgtttttctttttcgtGTAAAGAAATGTGTCTTTCTTTTGCTTAACTTGTACCAGTTAGTGCCACACAGAGTTCAGACTGATAACTGTATGGTCTGGCATGATGGGCGAATATGCTAATGAGAatggacatatatatatatatggatgttTGACAGAAAGCATTGTCATGTCCTCAGCCTGAACAATTTATGTTACAGTGTGCAGGGTTCTAACTTGAGAACaagtttattttcattcttgTGTTCATAGGGCtaatttttttcactgtaaGCGATTGAAATCTTAACCtatcattgcaaaaaaaaaaaaaaagatatttgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442943 lncRNA upstream 10863 11135553 ~ 11135936 (+) True G373982
TU442932 lncRNA upstream 55694 11070122 ~ 11091105 (+) True G373975
TU442930 lncRNA upstream 82764 11062016 ~ 11064035 (+) False LOC113537724
TU442882 lncRNA upstream 181644 10961739 ~ 10965155 (+) True G373939
TU442877 lncRNA upstream 195319 10948931 ~ 10951480 (+) True G373934
TU442959 lncRNA downstream 38237 11279816 ~ 11280114 (+) True G373997
TU443267 lncRNA downstream 166676 11408255 ~ 11409661 (+) True G374262
TU443302 lncRNA downstream 231120 11472699 ~ 11472973 (+) True G374293
TU443305 lncRNA downstream 253526 11495105 ~ 11495467 (+) True G374296
TU443308 lncRNA downstream 272772 11514351 ~ 11515525 (+) True G374299
XM_026931815.2 mRNA upstream 17284 11119269 ~ 11129515 (+) False atf7ip
XM_034300179.1 mRNA upstream 17284 11119435 ~ 11129515 (+) False atf7ip
XM_026931814.2 mRNA upstream 17285 11106019 ~ 11129514 (+) False atf7ip
XM_026931739.2 mRNA downstream 19149 11260728 ~ 11268151 (+) True si:ch211-243a20.4
XM_034300016.1 mRNA downstream 19321 11260900 ~ 11267209 (+) False si:ch211-243a20.4
XM_034300015.1 mRNA downstream 19323 11260902 ~ 11268151 (+) False si:ch211-243a20.4
XM_026931712.2 mRNA downstream 27956 11269535 ~ 11274442 (+) True zgc:101679
XM_034299984.1 mRNA downstream 42594 11284173 ~ 11294762 (+) False LOC113537603
TU442901 other upstream 137179 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 1270246 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 2992944 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 4427973 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 5939068 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 2774944 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 2781671 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 3838161 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 3872893 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 4107675 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile