RNA id: XR_004577343.1


Basic Information

Item Value
RNA id XR_004577343.1
length 2126
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC117596171
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13110314 ~ 13115156 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTGCATCTTTTGcatcttctttcattttttaatatttagaaaaaaaagggtttttttgggTTGTTCTTTAGTTGTCCTTTATATCTGAACAATTGACTCCTACCTGATTTGTGTCTATGAATTTGTCTGCTGATTCTCATTAAAAGGCTTGTGCTCATATCCAGCTGACTCTGCAAGtgatgcaatgcaatgcaagcAACAAGGACACACAGTGTTATTGATGTGAAGCATCACTCTGACAGAGCATCctggtgtGAACACTCTTTCGAGAGACTGTGAAGAGAATTCTTCTTACAAGAAGCTGCCTTATTCCAGTGAGcctgaggaagaggaagttCCCAGTGGAGCGTAGCCGGGGTCCAGGGGGAACATGTTGAATTGTGGATGCTCTGGGCTGAGTGGAGGAGTGTGTAAATCGACTGTGCTCTGTTCCTCCCTGAGGTCTGAAGGATGGGAGCTTATTAGCAAGACTTCCATCACCAGGACTGATGCAGAAGGGAAAGCGGGGACTCGTGTCCTCGTATGACTGCAAGGATTGCTGTGGAGAAAAAGGTGAAAGCAGTAGTCTATTCAAGCAACAAATCCATTTCAACCTGCGGAATAAATGCCATGGTGTTGATGTacttttctttcattaattgagaaaaaaaaaatcataatcttTGCACTGGCATTTCTTTAGATGCAGGATGTTCACATGCCAAATATGTGACCTTGTAAGTCTAATAATATGTCTAATAGGAAATTAATGACACCCAACGTGAAGccgagtttttttttaatcctcttataccatatcaatttgtcaacaattgcattctttttatttactaatcaatcacgtcatacttttatatatatatatgaatgtccACAAATCAaattagttcctcttatcatgTATGTAAGAGCAGGTATAAACAGTATAGTagatccctcaccagcctctctttttctctctttcatcacGTTACCGGAAAGATCGGCCCTCTTCCcatgctgatactggagactccttccataaatgttaaacaaacaactTCTTACAAAACAGCTTATGCGTTTTTCTTATATTATGTTGTTTTAATCATAAActtaaatttaaagtttattataAACCTTAGGCGACTTGTGGTGACATGAGCAACAGAGACCATTGGCGACTAGATGTGGGCGTCTCTAGCAATGCGACAAAGTTGAGaaaactttatgcaaatttggaACGACTACCAATTTGCAGTGACTACCAGTGGGAGTGAAGACAGTAGAGCACACGTGATCCATGGCTTTAAAAGCACTAAGGCCagaagctaagctaagctaattgGCGCCAATTGGCACACacttcttctccttcatctcgtATGATATGAATTTTATGTACAACACTCTCCCTCCAGAATGTTTCATTTTAGCGGCAAGAAAACTGGTTTATTGTTGAAAGTGGAACGCTAGTTGTGCCACCCACTGATAAATGGCAACCAGTAGTAGGAGCGCCTACTGGCAACTTCATATTACAGATACTGGCAACTTGCAGTGACAAAATCGCAGTATGTGTGAGCGTACCATTAGCATTAAGGTGGCTATTAGCTAGCAATATCGTTATTTTTATCTCGGAATAATACTATTTGCCCCTTCTCTCGATTCACGTTTGCAGATTTATAAGAATTTTCACAAGACACAAGTTCGGACTTTGTGGTGTaattaaattctgtttttatgtaaattctgtttttatgtcactggacagtaaaaaagcatttcactgcatgttgtactgtgtatggttgtgtgttttctctgagaCCAGTAAACTTTGAATTTGATTACCAGCTGTAGATTGTCGTATGACTTCATTTATATGAAATCTGACGACTCTGTTGCTAGAACTCCTATCAATTCTCTATGAGATTGGATTGAAGCAACTGAGCTACTCTTACGGCTGAAAAGGTTAATCCATAGGTCCAGCTACCATATCAACTAATTAACTGTTATTGATTTGTCCTTTAGAGATCTGATGGTACAGACTAGATCGAGTATTACAGTCATGTGAAAGCTCTTGTTTAGGTGCAGTGGAACTGAACTAATGCTTTGTGACGgtaataaaatgatttagagATTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444368 lncRNA upstream 15893 13094222 ~ 13094421 (+) True G375249
TU444357 lncRNA upstream 74812 13035210 ~ 13035502 (+) True G375238
TU444228 lncRNA upstream 368367 12741736 ~ 12741947 (+) True G375120
TU444157 lncRNA upstream 479084 12629553 ~ 12631230 (+) True G375053
TU444156 lncRNA upstream 481971 12628106 ~ 12628343 (+) True G375052
TU444391 lncRNA downstream 206117 13321273 ~ 13322869 (+) True G375270
TU444590 lncRNA downstream 321491 13436647 ~ 13437057 (+) True G375422
TU444602 lncRNA downstream 361320 13476476 ~ 13478259 (+) True G375431
XR_004577349.1 lncRNA downstream 419132 13534288 ~ 13554600 (+) False LOC117596173
XR_004577350.1 lncRNA downstream 433341 13548497 ~ 13554600 (+) True LOC117596173
XM_026932267.2 mRNA upstream 120219 12909822 ~ 12990095 (+) True nlgn4xa
XM_026932268.2 mRNA upstream 121940 12909822 ~ 12988374 (+) False nlgn4xa
XM_026932270.2 mRNA upstream 121940 12909822 ~ 12988374 (+) False nlgn4xa
XM_026931727.2 mRNA upstream 260117 12825950 ~ 12850197 (+) True pudp
XM_026932252.2 mRNA upstream 371651 12726500 ~ 12738663 (+) True sts
XM_026932122.2 mRNA downstream 118728 13233884 ~ 13270417 (+) True prkx
XM_026932116.2 mRNA downstream 173670 13288826 ~ 13302116 (+) True mxra5a
XM_026932117.2 mRNA downstream 173670 13288826 ~ 13302116 (+) False mxra5a
XM_026932368.2 mRNA downstream 238769 13353925 ~ 13394780 (+) True dhrsx
XM_026932366.2 mRNA downstream 246486 13361642 ~ 13394780 (+) False dhrsx
TU442901 other upstream 2100694 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 3233761 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 4956459 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 6391488 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 7902583 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 901367 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 908094 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 1964584 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 1999316 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 2234098 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile