RNA id: XM_026932116.2


Basic Information

Item Value
RNA id XM_026932116.2
length 9123
RNA type mRNA
GC content 0.43
exon number 7
gene id mxra5a
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13288826 ~ 13302116 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCACTCCTCCTCATCCCTAAAGCACACTCATctgccagaaaaaaaaccctctcaaAAGTTCTCTAAACTAAACGCAGAAGCAGCTGCAGAGCAACAGACAGACTATATGGAATTCCCAGGCTGAAAggaacatatttatttttatttatagctttTTGGTTGTCTTTATGGCTATTGCATTGGAGTGACAGTGGATACAGAGAAATTGTGGGGTATTCTGTGAAAAGTTTCCATGAATGAAAACGTTCTGGATTTGTTGTTTCTTCACCATTGCTTCAGTGTTGCAGTCCACGTTGACACTCGAAAAGAAACTTTTCAggagaagaatgaatgaaagtcaTGTTGAAATTTAGTAGAAAAACGACTTTAATAACACAGAGCATATAAGTGGTTTTGTAAAAGTTTGGCTGCAGCTGTGAAGCTGAAGATGGGCCGCTGTGTTGTGCGCGTGCTGACTCTCTTTACGCTGGCGGCGCTGGCGAGAAGCGCGCGAGGCTGTCCGCGTCCGTGCGCGTGCCCGCAGCCCGGAGAGGTTCACTGCACGTTTCGCTCTCTGCTCACGGTGCCTGCTGGCGTGTCCCGACAAGTGGAGCGCATGAACCTAGGGTTCAACACAATAAACCGAATAACAGACAGATCTTTTGCTGGTATGCGAAAGCTAGAACTCCTTATGATGCATGGGAATAATATTCATAACATTCCTGATGGAGCATTTCATGATCTAATATCTCTTCAGatgatgaagatgagctACAACAAGCTGAAGATCATTAGTAGACGCACATTTCAAGGTCTCTGGAATTTAGCAAGGCTGCACCTGGACCATAACCATCTGGAGTTCATACACCCGGATGCATTCCAAGGCCTCACCTCTCTCCGCCTGCTTCAGTTGGAAGGCAACCGTCTGCAGCAGCTCCATCCAGCCACCTTTGCAACTTTCTCTGTACTCAGCTACTTCCCCATGTCCACTCTGAAGCACCTGTACCTGTCCGAGAATGGGCTTACAACACTATCACAAAAGATGTTAGCTACTATGCCTCAACTGGAGAACTTGTTCTTGCATGAGAACCCCTGGACCTGTGACTGTAGGATAAAATGGTTCAAAGAGTGGAGCTCAAGTGCACCAGCAGATGTACTCAAATGCAAGAAAGATAGAGCTTTCCCTGGAGGACAGTTGTGCcctgtgtgtttctctcctagacaactaaagaaaaaagatcTTCGGGAGCTAGACAACCCAAAATGCACTAGTCCTGTCATTAGTGCCCCTCACAGGACCTCTACCCTGGACACAGAGAGTGAACTCATGACATTAGATGACTTCAGTCAACCTCTTGGGAATGTTTCACTTGGCTTGACAGACGAACATGGAAACCAAGTAGATCTGAATTGTCATGTCAATGAACCGACCAAGTCGACCAGAATGAACTGGAACCATGTTAACTCATTTCAGATTAACACAAATGTCACTGTGACATTAGATCTAGAATGCCCAATTGACAGGGGCACTTATGAAAAGCTATGGAGACTTGTTGCGTATTATAGTGATGTACCTGCTCACCTGAAAAGGGAGATTATGTTGAGCAAAGACCCTCATATTAGCTACAGGTATCGGCAGGATGCAGAAATGGATGCTGTTTACTTCACTGGCATGAAAGCCAATATGGTGGCAGAACCTGCATGGATAATGCAGTCAGCAGTGAACTTACAGTTAAATAGACCTCAGTCCACAAGTAAAAGGGTTAGACTAACTCTCAGCACCCATCTAACACAGTTGGTAGAGGCAGAGGAAGAGAGGCAACAGAGGAGACAGTGGGTTTTGATAGAGTCCAGAAACAGCACCAAAATATCTCAGGTTGTTGTGGTGGGCAACCCAATTCAGATGCACTGCAATGTGCACAGCTCAGGGAACCCATCAATAAAGTGGATGCTGCCCAATGGGTCTAAAGTTGAGGCCCCATATCAAAGCAGCGATAACAGGATCACAGTGTCTCCATCTGGTTTGTTGGCTATAACAGCTGTGGATCACTCGGACTCAGGTGTTTATTACTGTATAGCAATAGTGGTAGGTGATGTAAGTATTCTTCCCTTTCGTCTGACAGTGGAGGACTCTTCTACTCCAGCTCCTGGAAGTGAGGGTATGGCTGAACCTATGGCAGGAGTCGCTGGCAGGCCTGTTTCTCTTCCCTGTGTAGCCCTGGGTTCTCCTGATCCAGATATAAATTGGATCCTGCCAGACAACACTATTATAAACACATGGTCAAATTTATCCAGGATGTTTGTGGCCTCAAATGGAACTTTAACCATTCGCAATAGCCAGCTCTCAGACAATggtttttataaatgtgtggCTGAAACTCAACATGGTGTGGACTCATTAGCCACAAAAGTAACTCTGACAAGGCCCTCCGGAGGACATCCTATAAGGAAATATTCCAGTAGACCTCAGCCTGCAGAAGGAGTCTCAACCAAAATAAAAGCTCCAATAAATAATGATGTGGAAGCATCTGGGGACAATGAAAATGAAGGGCCTGAAGCAAAAACTTTTGAACAATTGGATACCTCTTATAAAAGGAGAATTCCAAATGCTCCTGTACGGGGTGGACACCCAACCAGAAAGGTGTGGAGACGTCCTCCCTTGCCAAGAAGACAAATAATCTCTAAGGGAGCTGAAAGGAGTAACCGGACAGAAATAAGGAGAAGAATCAATGTGTCAAATGGCCAGATAGATCCAGAGCATTGGGCTAACATTCTGGCAAAAGTCCGCAATAGTGGTGACAATGCAAAAACGACTACAACTACAACAAGTTCTGTTTTGACTAGCACAAATAGATTACAGCAGGTCGACACTGCTATCACAAAGCAATCAGAATCTCTTAAGAGAATGGAGGGATCAATACCAGATAGTAGTACAACCAGAGCAACACCACAAGAAgcatcacacacagtcacagcaTCAGAGACATCGGTGCAAACCACTGCACTCAGCTTAGATATAAAACCACTGGATGCTGAAGATCAGATACACATAACCTACCAAATCGCTGCACCCGAAGTCAACCAAGATTCTGACTTGATTGATGCTGCATATACCACAATTGGTCCACAGCCTACTGCTCATTCAGTGATAGATGCAGATATTGCCAAGTGGGATGAAGTGAGCACTGTTGAGAGCACAACTCTTTTTCAACATAACCAAAGCCACACGTTGGGTAGCAAAGAAACTGAAGCAATTCCCAGGGCTAGAGGTGATGGGAATGACAATGCTGGTGATAATGAAGatagcattttaaaaagccATGGAATTGAGGTTTATCAAGGAAAGTCTGACCACAGTCCAATATCCACCACATCTATGGTTTTTGAAGAACAAAACCCGAAAAATTATTATGCTACTCGTCTATCTACTGACATTGCAAAAACTGCATTGCAAGAGAAACATGACAGTTCACAAATTCCAGTGCTTACCACTATGGCACCAAGATCTCAATCCACTTTAGAAAATGACAGAGGAACGCATACTACCTCAATTAATCTTAAGCCTCCCTCACATGCTAGGGTCTCATCCAATTCAAAACGTAAGAATAATGGCAGACGAAGAAAGCCTAATAGAAAAAGTACAAAACCAATACTGTCCCAATCTGCATACTTCATGAATATCACACCAAAGCCCACTACTTTAGCCATTGTTTCTGAGGTCACCAAGATGACTGCCACATCTGAGTCGAAAATAGCAACATCTACAGGGGTTATGAGCATTGGAGCCAAAGTGAATAGCACTGTTCCACTTACTGACATCCAGGCAACATCACTTAGTGAAACAAGTAATGAAAACAGATCAGACCCTTTATTGGACATCAGAAATACTATATCCCCTGATACTTCTGTCAGTGAGAAAGTGTCAGAAGCAGAGCATACACCATTGCCATATGCTATACCACATAATATATCCCTAGGCAATACAGTGTTGTCAGTGTCTTCATCAACATCCTTAGGTTTTATAGGACAATCAAACATACACAGAGAAACAGTTTCTACTCTACCTCCTCTAATTCAGAACACTCCATCTACTGACCATGAGACAGTTATAAGCCTCCATCCCCTGATGGGAATACATTTTGAAGAGGCAGAAAGTGAAAGCACTACAGGACATCCCAGCTCAGGGATAAAATATGACACATCCTCTGAGAGTCCTCAAACACAATCAGAAGCAATACCAGGTGCAAGTCTAGACAAAGCAGAAAATCAGTATAAGTCTAGTGAAAATAAATTTGTGACTCCATCCAAGGAGCTTGTGAAGGCGTTCTCACTTAAACCTTTCCCCTCATCTGCTGTGAGAACCCAGCATGAAATCATTGCAAGCCATGACTCAGAAATCCCTAGCGGTTCAACAAAAGCAAACATCTATGAGGGGGCTCCTGAGAATTCTCAGGTTACAACAGAGAGGTTCATAACATCCCAAAATGCTCAACAATCTGGTATGGCCACtacaacaaaactaaacagtGCTTCACCTAATGGAAAACAAGAAACAGTCTCAGGTAGGAAGGCTGAAATTGCAGAAGAAAATACTGTACCTCTGATGGAAGATCATAACCCTGTCACCACcctgaaaacaacaacagcaattaCTGCTAATActccaacaacaacaccaccaccaaaaaCATTATCAGTAACAACACTGCCTCCAACAACTCCAAAGAGATGGAGACCCTCTGTAAGCCACCCACATACATCTTTCCAGAATATACCTTCCATTTGGGGCAGGTCAGGTATACCTGACAGTCCAAATCATATtcctgacagacacagagaaagaattGTAAACCCAGAGCAGAGTATCAGGTCACCTAATAGAAACAGGCCAACTGAATTTCATTCAACAAGTCTATCAGAACATATTAAAACAgatagcactgacactgaattaAGCACCAAAAAGCCAAAACCACAAACTACACTTAAAGTTCCCACAACTACCCCAGAAGTCCTAGTTCCTCCTCCAAGACAAACCCTTCCTGTGAAGCCAAATGGTAGTTCTTCCTTTATCCACCATCCTACATCCACCTACAGTGTCGATCATTCTCAGCAAAAGCCAGTTATCCCAGCCAGAAGAGGACGGCCTAAGATTATCAACACCAATATTAGCACAGTGACAGTACAGGCTGAATCTGATGCCTATCTACCCTGTGTGGCTGTAGGAGAGCCTAGACCCTTCCTCTCCTGGACTAAGATCTCAACAGGAGCCAGCATTACTCAGAACACAAAGATTCAGCGATTTGAAGTCCACCCTAATGGCACCCTCACAATCCGCAATATCCTTCCATTAGACCAAGGCCAGTACCTCTGCAGTGTCCAGAACCAGTATGGACAAGACAAATTGGTGGTCACTTTGATAGTCTTAGCTGAACACCCCAGGGTGTTTCAGCCACGCTATCAAGACATAACCAAAACCCTGGGAGATACTATTGATTTGGAGTGTCGTTCCCAAGGAAACCCTCATCCTCGCACTACATGGGTGCTCCCTAATAGGGCAATAGTACATATGGAAGCTCCCTCACTTGGTACACATGAACATCGAATTTCAATTTTAGCCAATGGCACACTCCGGATTAAATCTGCTACATACACAGATCGTGGGGTTTATAAGTGCATTGCTAGCAATGCAGCTGGTGCAGACACTATATCTGTTCGTCTTACAGTTGCTGCTTTACCTCCAGTGATCCAGCAACTGAAGAATGAGAATATTACACTCCCAGAAGGCAGCACTGTCTACCTGAACTGCAGTGCCAAAGGTGCTCCTCCTCCTGCGATAAGCTGGTCTATGCCAAATGGTGTGCAGCTTCATTCTTCAGAATTTGTTAGTGGCCTCAACCTCTTTGTTTTCAACAATGGGACCCTGTACATTCGTGGGTTGAGTCCGGCAAATGCAGGGAAATATGAATGCACGGCTACTAATACAGTTGGGATTTCATCCAGAGCTGTTAGTTTGACAGTGAAAAAATCTATTGCATCAGCCAGAGCCAGGATTACTTCCTCATCTCCACAGAAAACAGATGTCATCTATGGGGGAAAGCTGCAACTGGACTGTGTTGCAGCGGGAGATCCAGAGCCGAGGGTCATCTGGAGGACTCCATCCAAAAAGCTTGTGGATGCTCATTATAgTTACGATCCACGAATCAAGGTGTTTGCCAATGGGTCACTGTCTATCCACTCTGTAACAGAGAAAGATGAAGGTGACTATCTTTGTGCTGCACATAACAAAATGGGAGATGATTATGCACCCCTTAAGGTCAGTATCTTGACAAAGCCAGCCAAGATTGAGCAGAAGACACAGATCAACCAGAAGGTGATGTACGGGGGTGACCTGAAAGTCGACTGTGTTGCATCAGGTCTACCAAACCCACAGATCCAGTGGGCTCTGCCTGATGGCACTATGGTCAACAGCATTATGAAATCTGACAGGAGCAGTGGTGGTCCAAGTAGTAGATATGTGGTTTTTGACAATGGCACCTTATTCTTTAATGATGTGGGGATGCACGAGGAAGGTGATTACACATGTTATGCTGAGAACCAGATTGGCAAAGATGAGATGAAAGTACATGTCAAGGTGGTGGCAGATGTACCTGTGATCAGAAACAAGACCTTTGAGGTAATCAGGGTCATGTATGGAGATTCAGCCTCACTGAAGTGTACTGCCAAAGGAGAGCCTAACCCTCATATACTGTGGTTCTCTCCAACAAATAGAGTGATTCCTTCTGCCTCAGACAAGTACTTGATCCATAATGATGGGACACTGGTCATTCAGAAAGTGCAGCGCTTTGATGGCGGGAACTACACATGTCTAGCCAGGAACAGTGCAGGGCAAGATCGTAAAGTGGCCAGGCTGGAAATCCTGGTATCACCTCCTGCTATCAATGGGCTAAGAGGCTCCACAAACTCTTTGAAAGTGTCTGCAATGAAGAATCAAAGAAAGCTGATCCACTGTGAGGCTTCTGGTACTCCTGTTCCTCATGTGCTATGGGTTTTCCCAGAGAATGTTATTCTGCCAGCACCATACTATGGAACCCGGATGACAGTCCATCGAAATGGCACACttgatattcattcattaaggGTAACCGACATAGCTAAATTAACCTGCATTGCTCGTAACGAAGGTGGGGAAGCAAGGCTCATGGTACAACTTGATGTGATGGACATTATAGAGAAACCAAGACTCAAGAGTCCTAAAACGGAATCTTTCACTCTAACTGTTGGCAGGACAATGATGCTAAATTGTTCTGTTGAAGGTTCCCCAGCACCACAATTGACCTGGGTTCTTCCTAGTGGTTCTCCACTAATGAGTGGCTCCCAATTTAACAAGTTCTACCACAGGTCTGATGGGACTTTGGTAATTACTAACCCGGCTGTGTCAGAGGCGGGAACGTATCGATGCTTGGGGCGCAATGCTGGTGGACTGGTTGAGAGGACTGTAGTGCTGACTCCAGGGCGGAAGCCAGAGATTAATAACAGATACAACTCACCTGTTAGTGTGATAAATGGTGAAAGCCTACAGTTGCACTGTCTGTCTACTAGTGACCCTGTCCGTCTTACATGGACTTTGCCAAGTGGGGTTGTTCTAAACCGACCTCAACGGGCAGGTCGCTATGCTGTTCTACCAAATGGTACTCTTTCCATCCAGCAGGCTTCTGTGTACGACAGGGGCTCTTACACGTGCCGTGCCGCAAACGAATATGGAAGCTCCTTGCTAACAATCCCAGTGGCTATAATTGCGTACTCACCACGAATCTCCAGTGGCCCACCTCCTACCACCTATGCCAGAAGAGGAGTTGCTGTTCAACTGAATTGTGTAGCTACTGGTATCCCCAAGGCAGAAGTGGCATGGGAGACTCCAGACAGAACAAGGTTAATTGTCAGTACTCAGCCACGCCTGTTTGGAAACAAGTATATACACCCTCAGGGCTTCCTTATAATCCAGAACCCCACGCCAAGAGACACAGGTTTCTACAGATGTACAGCTAGAAATGTGATTGGGGTTGACTCAAAGGGTACATACCTTCATGTGTACTGAAAAGCAGTAAATTCAAAACATGCCCAAAGATCTGCGAGGTTCAGCTAATCCACAGCTTTATTTCTAGCTATTTTTCAATGTGAACATGACTTGTTATCATTCTAGGACATGTTCTACTGTGTTTCTGGAATCTTTATCATCACTTTGCCAGTCAGTTTTTCTATTACATCAGTTATTGCAAACATCTAGGAAGGTGTGCTACTTATCCAATTCATACCTAATACCTAGTAACTACTAATCTGACAattcagtgtaatttttttaatgtaaatactACAACCTGCTTTTTTTAACTGTTGCAGCCAGGGACAATTTATGTCAAACTGTATATATGAGgcctatattttttttatttaatcttgaaAAATAATCTGAGGATATCACTGACATCTTCAATATGGAAATATGAATCATTCAGGGATATTAAACCAGACAGCTACATTAactaatgtttttaattcaaaatgGGAGAAGGAAAACTGtttaaagtaatttttattgcttttgaaCACATTAACCTTTCCTGTTCCGGTACACTCAAACCTATAAAGGTATAGTTTTtcttggcaatttttttttacatatttgctGTAGGACATTGTTGACATTGGACTGACTGGGAGAAATGTTCAAACCCAACCCTGGAAAGCACTATGCGCTGAGTTAACTAAAACAGCTAACTTTTCATGTAGACTTGGTTACAGTTAATGGCTTAGATGTGTATACAAACagaacatgacaaaaatgaGGACGTTGTTGAGAACTTTCCTCACTTATAGCATTATATGTAAGAATGTTCTATAGCGTTTCCTATTCAGTTTATAAACAGAACCCCTTTCAGAAGTGAACATTGTCTAAACGTGTATTCTACATACCAGTTGTGTAGGATTTTGTACGTATACTGACTGCATCTCTGTAGAACTGACCAAAAAAGGCACATGTTTGTTTTCCATGACGTTGCTTTAACTTATTTGTCTTTTAAAGACTTGTATtgagatttaattttattttggatATCTTTAATAAAGACCTTTTTACACAACCTA

Function

GO: NA

KEGG:

id description
K24400 MXRA5; matrix remodeling-associated protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577343.1 lncRNA upstream 173670 13110314 ~ 13115156 (+) True LOC117596171
TU444368 lncRNA upstream 194405 13094222 ~ 13094421 (+) True G375249
TU444357 lncRNA upstream 253324 13035210 ~ 13035502 (+) True G375238
TU444228 lncRNA upstream 546879 12741736 ~ 12741947 (+) True G375120
TU444157 lncRNA upstream 657596 12629553 ~ 12631230 (+) True G375053
TU444391 lncRNA downstream 19157 13321273 ~ 13322869 (+) True G375270
TU444590 lncRNA downstream 134531 13436647 ~ 13437057 (+) True G375422
TU444602 lncRNA downstream 174360 13476476 ~ 13478259 (+) True G375431
XR_004577349.1 lncRNA downstream 232172 13534288 ~ 13554600 (+) False LOC117596173
XR_004577350.1 lncRNA downstream 246381 13548497 ~ 13554600 (+) True LOC117596173
XM_026932122.2 mRNA upstream 18409 13233884 ~ 13270417 (+) True prkx
XM_026932267.2 mRNA upstream 298731 12909822 ~ 12990095 (+) True nlgn4xa
XM_026932268.2 mRNA upstream 300452 12909822 ~ 12988374 (+) False nlgn4xa
XM_026932270.2 mRNA upstream 300452 12909822 ~ 12988374 (+) False nlgn4xa
XM_026931727.2 mRNA upstream 438629 12825950 ~ 12850197 (+) True pudp
XM_026932368.2 mRNA downstream 51809 13353925 ~ 13394780 (+) True dhrsx
XM_026932366.2 mRNA downstream 59526 13361642 ~ 13394780 (+) False dhrsx
XM_026932367.2 mRNA downstream 59526 13361642 ~ 13394780 (+) False dhrsx
XM_026932376.2 mRNA downstream 126457 13428573 ~ 13435833 (+) True chmp2bb
XM_026932112.2 mRNA downstream 152607 13454723 ~ 13476061 (+) True htr1fb
TU442901 other upstream 2279206 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 3412273 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 5134971 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 6570000 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 8081095 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 714407 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 721134 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 1777624 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 1812356 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 2047138 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile