prkx (prkx,LOC106575200)


Basic Information

Item Value
gene id prkx
gene name prkx,LOC106575200
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13233884 ~ 13270417 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932122.2
tttaattcattgtcCGGTGGAGTAGACGGGTTCGTGTTTCGGTGTAGGCACTGGCGAGGGAGGAAGTGAATAATTTAAATGTCTCAGATAGCGAGAAGAGACGGAAGGACGCGTCAGGGGGTATTTTTTTGACACCGGgagtttttttgttcattttgtcctGTCAGTTCTCAGTCGTGCCTTTGTTTACTAACGCTCAGTGCTTTCtaaagtagagagagagagacgttacGTGACATTTCCATTAACGCAGACTGTGAGGTGTATTAATTAGCATGCTTGTTTGTTTAGAAGATAACCGGTTGTGGTGCTTTATCAGACAGAAACTTAGGTTTGTGTGAACAAAGAAGGTTAACGGTGTCCATCTTCTGGGAAAAAACCGGAATAACTCGTAAAAAAAACGCTGCTTGGTTCCTTTTACGAGTCGAGCGGATGGCAAGATggcaacaacaataacaacaacaacagcagcagcaaaaggACTGACCActgaagagacagacacaacaaACAGCGCCACATTATCTACAATGGCAGCATCTTTAGCTCTAAACAACAGGGTTTACTCTCTGGACGACTTCGATACAGTGGCCACCGTCGGCACAGGGACGTTTGGAAGGGTTTTTCTGGTCAAGGACAAAAAGACGAGGGGTTTCTTTGCCCTGAAAGCCATGAAGATCCCAGACGTCATCCGATTAAAACAAGAGCAGCACGTTCATAACGAGAAGGAGGTTCTGACGGAGGTGAACCATCCCTTCCTCATCAGACTGTTTTGGACGCACCATGACGAGCGCTTCCTGTACATGCTAATGGACTACGTGCCAGGCGGCGAGCTGTTCAGCTACCTGCGCAACCGCGGCCGCTTCAGCAACAGCACGGGACTCTTCTACTCAGCAGAGATAGTGTGTGCCATCGAGTACCTGCACTCCAAAGAGATCGTCTACAGGGACCTGAAGCCTGAGAACATCCTGCTGGACAGAGAAGGCCACATCCGCCTCACCGACTTCGGCTTTGCGAAGAAACTTTCCGATCGGACGTGGACTCTGTGCGGCACTCCTGAGTATTTAGCTCCAGAGGTGATCCAGAGTAAAGGTCATGGCCGGGCAGTGGACTGGTGGGCTCTGGGGGTTCTCATTTTCGAAATGCTTGCTGGGTACCCGCCATTTTTTGACGATAATCCCTTTGGCATCTATCAGAAGATCCTGGCGGGAAAGCTGGAGTTTCCACGGCATCTGGATTTCTACGTAAAGGATCTCATCAAGAAGTTTCTGGTGATTGACCGAGCAAGAAGACTTGGGAACATGAAGAATGGAGCAGAAGATGTGAAAAAGCACAGGTGGTTCAAGACTATAGACTGGGATGCTGTGCCCAATAGAAAACTAAAGCCCCCCATAGTTCCTAAGGTATCTCACGAAGGCGACACGTCTAACTTTGAAGCCTACCCTGAGGACgagtggaaaaaagaaaccCCAGTGTCACCAAAAGATCTAGAGATTTTCAAGAActtttgaaaatggaaaaagaggGAACAAAGTTTCCCTCCGCTGGTGCAATGCGTCCATTCCAATGCCGGTGGAATTCCAATGCCGGTGGCCAGCCTCAGCCTGCTCTTCTGTCACATCCTGATTGACAACATAGAGAACGATTGGCCATCATGTTTActatcaccatcatcctcaAGATCAAGTGTAGAGAGAAGGAAGcgctatttatttctgtttctctgagCCTACTTTtcttatgcaaaaaaaaacaaaaaaaacaccaaaacagagGTGTCTAAGCCAAGAACACACTAGAAGCCAGTAGTCCgatacagtttacagtttaagCTATCGGAAACAATGCATTTCGGACATGTTCGTTGTGTGGCTATGAAGTCATGTGAAAtggaaaaccagagaacccaaagTGTTAcacttttaatgttattttcaaTCTAGATGTCGGATGGTTTATTATACATCCAGCTTTGCTCttatttaaaggtttttatCATAAACTACAAGTAATATGACAAACATGATGTCTTATagtagggatgcatcaatacgatttttgtttttcagaccaAATACAAGTACATGTTTTTAGTGCTTGTTGATACCGATACTGATAccgaaatgagtaacctacatAGTATTAATCCAGACGCCACAGAACCTTTTATTTAGCTCTATTTCATTTTCCCTGGATTAAATAGTGTCCAagaaaagtgcacaagtgcatgTCCATGCCCTTACGCTATGAGCCTCGTTTTTTATGAGTGAGTTCATTTTATaagaagtgcattagctagctacaataGTTACCTCGGATCGTAGGGTTGCAGCGTAGAGCAGGTTTTGTTTCACGTCGGAAATACACTTCCCTAAAGAGGTAAGTAAAGTAGGTAATCCCTTGTTGCCGAGGACCGATAGTGGCTGATTGTCATGAAACAATACGCTGgagaaaagctgaaattttcGCTCTGCTTgcgtgtgttttatgtgttttgtaggaggatgctgtagttcctcctgtTGATGTTTTTGCAGAGCACATTTTGCCAtcattattcataatatatattcatattattcatatacATTAAGAtcactgtcattttgtgtcGTCTGTTCATTAATTCAACAACATAGACTAGGCCTATGTCACATAGTATCACCCAGTATTGGATGTTGGTATTGGCATTTTTTATGAGGTttttatgagtaaatgagcacagtatcTTACTGATATCAGTAAttgtattgatgcatccctatcATAATCTCTACcaaattttggtcaaaaattGACTGTTTTAATTGTTAATGTATTATGGTGCTTTTTGACTTTTAACTGGTAGGTTTTGTTTATGTTAAGGTTTTGCTGCACCCTCAGAAATACGGTGTCCTCATGTTCCTCTTATGAATTTGTGTCCTCGTTATCTCTTGTAAATGAGTGCATGTACGTAACTAAACTTTTAGCACTTGCCTAAGGTGGCCTTATATTAGGATGTGTAAATTGaaatgtaggtttttttttttttttttttttttttttttttaaaaaaaaaaaaaaaaacaaatggtaCTAGTGTGTTTGAAGCAACTGGTGCAGTCAAATCACTTTTTACTCTGGAATATAAAAACACTGTATAGAGACGTGAGATTTAAGTTTACTGTTAAATTAGTAgctagtgtgtgtatgtgtctaaaTCAagttcttcctcctcttcttcttcttcttcttcttcttcttcttcttcttctttttcttgacCGTGAGGACTTTCATGAGTGAACAAATTCACATCTTCTACAGAGGTTGCACGACTACTAATTTTTACTAGTTGAACAGTAGGTCAAAAAAGGAATCAACAATTCGTCTAgtccatagttaaagcaaaaaacgTTTACGTCATTATTTATAGGTTGTTTGATTTGTGCAGTAAAGGAATGAATCAACAAATTACAAGtgacaaaatacatttcagcTTTATTGCTGTCTTAGGCTACACTGTTAATGATGAAAGtgaataaatcagtgcaataaatggGCAAAAGAGTAAATCTGTGtataatattacagtatttaaggaCATACCAGTTCTTAAAATGTATGAGATGGTGGCTCAGCTGAAATCGTTGATTTGAAATCGTTGTACATGCAGCATGGTACGGAAACTCCTTACAGCTTAATGATGGCAGGAGGATATGATGTCTACAGCAGCCTCAGCAGCCGATCTGACTATACTCTAGCTGAGGTGGTTAGGTAGTGATGTGCAACCCATGgctcagaaaggaaaaaagagttAACACTCCattaattaaagcaaaagaaaaaaaacgttTCCCAATGTAGTGTGCATTTGGCTGTAGATTTGtacatttatgtacatttatcTGGCATCTCCTTACTGTTtgcctctgtgtgttttt

Function

symbol description
prkx Predicted to enable cAMP-dependent protein kinase activity. Predicted to be involved in peptidyl-serine phosphorylation and signal transduction. Predicted to act upstream of or within protein phosphorylation. Predicted to be part of cAMP-dependent protein kinase complex. Orthologous to human PRKX (protein kinase X-linked).

NR:

description
PREDICTED: cAMP-dependent protein kinase catalytic subunit PRKX

GO: NA

KEGG:

id description
K19584 PRKX; protein kinase X

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932122.2 True 3923 mRNA 0.41 8 13233884 13270417

Neighbor

gene id symbol gene type direction distance location
nlgn4xa nlgn4x,nlgn4a,LOC107708671,LOC107724264,LOC107602764 coding upstream 243789 12909822 ~ 12990095 (+)
pudp pudp,LOC107681515,LOC107571754,LOC107691609 coding upstream 383687 12825950 ~ 12850197 (+)
sts sts coding upstream 495221 12726500 ~ 12738663 (+)
anos1a anos1,LOC108428190 coding upstream 536569 12673993 ~ 12697315 (+)
dpcd dpcd coding upstream 651731 12578328 ~ 12582153 (+)
mxra5a mxra5 coding downstream 18409 13288826 ~ 13302116 (+)
dhrsx dhrsx,LOC108437760 coding downstream 83508 13353925 ~ 13394780 (+)
chmp2bb chmp2b,chm2b,chmp2bb,LOC107691601,LOC107552237,LOC107654764,LOC107598748 coding downstream 158156 13428573 ~ 13435833 (+)
htr1fb htr1f,LOC108258890 coding downstream 184306 13454723 ~ 13476061 (+)
znf654 znf654 coding downstream 208405 13478822 ~ 13490069 (+)
LOC117596171 NA non-coding upstream 118728 13110314 ~ 13115156 (+)
G375249 NA non-coding upstream 139463 13094222 ~ 13094421 (+)
G375238 NA non-coding upstream 198382 13035210 ~ 13035502 (+)
G375120 NA non-coding upstream 491937 12741736 ~ 12741947 (+)
G375053 NA non-coding upstream 602654 12629553 ~ 12631230 (+)
G375270 NA non-coding downstream 50856 13321273 ~ 13322869 (+)
G375422 NA non-coding downstream 166230 13436647 ~ 13437057 (+)
G375431 LOC108258891 non-coding downstream 206059 13476476 ~ 13478259 (+)
LOC117596173 NA non-coding downstream 263871 13534288 ~ 13554600 (+)
G375496 NA non-coding downstream 431710 13702127 ~ 13796535 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 1107689 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 2165882 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 2224264 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 2974353 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 3357331 9839096 ~ 9876553 (+)
gpalpp1 gpalpp1 other downstream 746106 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 752833 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 1088325 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 1809270 15079687 ~ 15099905 (+)
smdt1b NA other downstream 1844050 15114467 ~ 15116878 (+)

Expression


Co-expression Network