pudp (pudp,LOC107681515,LOC107571754,LOC107691609)


Basic Information

Item Value
gene id pudp
gene name pudp,LOC107681515,LOC107571754,LOC107691609
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12825950 ~ 12850197 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931727.2
CCGTGTAATGGACTTCACGCGCCCTTGCTATGAGCTTGGACAGTGTATGATTAGAACAGCTGATAGGTTTTACGCGTGCAAGTTAGTTTTTGTAAAATGGCGTCTTATAAGGCAGTATCGCATGTGCTGTTCGACATGGACGGCTTGTTGTTGGATACAGAGAGGTTGTATACACTCTCTTTCCAGGAGATCTGTGATCGGTTTGGGAAGACGTACACATGGGAGGTCAAGTCCACCGTGATGGGAAAGAAGGCGTTGGATGCGGCCAGGATCATCCGAGACTCCCTGGAACTGCCCATGACGAGCGAGGAGCTGCTGGAAGAGAGCAGAGAAATACAGGAACATCTTTTCCCCTCCGCTTCCTTGATGCCAGGTGTGGAGAAGCTGGTCACACATCTCCATAAGCACAAAATCCCCATTGCCGTGGCCACCAGCTCCGCCGGCGTGACCTTCCATTTGAAGACAAGCCGCCATAAAGACTTCTTCAGCCTGTTCAGTCATGTCGTTCTTGGAGATGACCCAGAAGTGAAGAATGGAAAGCCTCAGCCTGACTCGTTCCTGGTGTGCGCCAGCAGGTTTGACCCCCCAGCTAAGACAGAACAGTGTCTGGTTTTCGAAGACGCGCCCAACGGAGTGAAAGCAGGCTTGGCGGCTGGCATGCAAGTGGTCATGATTCCCGATAAGAACATGGACAGTAGACTTACACAGGAGGCCACGCTGGTGCTCAACAGCATGGAGGACTTCAGACCCGAGCTCTTCGGCCTTCCTGCTTACGATTAAACCCTGACTCATGCCACAGCTTTCCCTTAGTCAGTCTATCTAAAACGGTGTTAAGCTGTTATGAGCAGATGTATCAAGCTCAGCTCTTTTGAGCCATGTAAAGATTGTTGGCAAGTTTgtcattgtgatttttttaatgtaattaataccTAGTTTACACTCATATCAGGTTAGATTTTTTTACTTGGTGATGTTTCAAGGGACAAACTGAAATGAAGGGACACTTCAATGTACGGATCAGTCTCCtaatcaatataaaaaaaa

Function

symbol description
pudp Predicted to enable phosphatase activity. Is expressed in epidermis and somite. Orthologous to human PUDP (pseudouridine 5'-phosphatase).

NR:

description
pseudouridine-5'-phosphatase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K17623 PUDP, HDHD1; pseudouridine 5'-phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931727.2 True 1044 mRNA 0.48 4 12825950 12850197

Neighbor

gene id symbol gene type direction distance location
sts sts coding upstream 87287 12726500 ~ 12738663 (+)
anos1a anos1,LOC108428190 coding upstream 128635 12673993 ~ 12697315 (+)
dpcd dpcd coding upstream 243797 12578328 ~ 12582153 (+)
LOC113537718 NA coding upstream 263116 12555158 ~ 12562834 (+)
nt5c2b nt5c2b,LOC108258961,LOC108435980,LOC107602759,LOC107704322,LOC107738462,LOC105891044,LOC107568788 coding upstream 324422 12474299 ~ 12501528 (+)
nlgn4xa nlgn4x,nlgn4a,LOC107708671,LOC107724264,LOC107602764 coding downstream 59625 12909822 ~ 12990095 (+)
prkx prkx,LOC106575200 coding downstream 383687 13233884 ~ 13270417 (+)
mxra5a mxra5 coding downstream 438629 13288826 ~ 13302116 (+)
dhrsx dhrsx,LOC108437760 coding downstream 503728 13353925 ~ 13394780 (+)
chmp2bb chmp2b,chm2b,chmp2bb,LOC107691601,LOC107552237,LOC107654764,LOC107598748 coding downstream 578376 13428573 ~ 13435833 (+)
G375120 NA non-coding upstream 84003 12741736 ~ 12741947 (+)
G375053 NA non-coding upstream 194720 12629553 ~ 12631230 (+)
G375052 NA non-coding upstream 197607 12628106 ~ 12628343 (+)
G375051 NA non-coding upstream 199718 12624928 ~ 12626232 (+)
G374985 LOC108258315,LOC108435981,LOC107708677,LOC107704309,LOC107568787 non-coding upstream 291651 12533805 ~ 12534299 (+)
G375238 NA non-coding downstream 185013 13035210 ~ 13035502 (+)
G375249 NA non-coding downstream 244025 13094222 ~ 13094421 (+)
LOC117596171 NA non-coding downstream 260117 13110314 ~ 13115156 (+)
G375270 NA non-coding downstream 471076 13321273 ~ 13322869 (+)
G375422 NA non-coding downstream 586450 13436647 ~ 13437057 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 699755 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 1757948 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 1816330 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 2566419 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 2949397 9839096 ~ 9876553 (+)
gpalpp1 gpalpp1 other downstream 1166326 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 1173053 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 1508545 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 2229490 15079687 ~ 15099905 (+)
smdt1b NA other downstream 2264270 15114467 ~ 15116878 (+)

Expression


Co-expression Network