G375051


Basic Information

Item Value
gene id G375051
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12624928 ~ 12626232 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU444155
GTTCATTTGCTCTCTAGGGATTTTATTCAATATATTACAATACCTTTAAGAGAGAAGACACATTAGGTTTAATAAGACACATTATGCACTTATTTTGGCCAAGAAAATAAAGTTCAGACAATGTGTCAAAATTCAATGATTTTAATCAGTacattgttaaaatgttttaatcaagaAGTAAATCGTTTTCCAATTGGTAATAACCCGAAAACAACTCATACCATAATACATTTGGGCAAGATGTATAATTAGCAAATTCATTTATGCTTTACAATTCTGCACATGGATCATGTTTTTAGAAATGAGCAATGAGTGCTCTCTACAGGTACAATATTGTGTTTGCATCAGTATTTAAGGTGGAACTGACAACTTAAATAAGAAACTGTGTAAACTTCAACCTTGTATTTGGTGTTAATATGAAGGGATGTACAGAACCCTGCTTGTTTTTGGCATATCTGGCTGAATGAAATGCACAGTGCAGACTTTTGTGACTGATGAGGTTTTTAATCAGATGAAAAATGTTAATCAGAAAATGTTCCCTAGTGAACTCTTGGTTTGTTACAATAGCTAATTACCAGACCTCGATtgcactgaatgttttttttatctaaaaccTCTGTTACTGGAAGATGGGTTCATCTAAAAAGGATATTTGACAGAGTACACAGCTCATCCATCGAGACAGAaatctacatttatttactgtgttaGCCATGGACTACTCTAATTTCTGCTGCAAAGGTGTCTATATATAGACTAAAGCAAATTACCTGtattatttactataattaAAGTACAATAATACTGTAGTAAAGAGTATATAGCATTCATTTCCAACAATAATAAGCTACAAAAATCTCATAAAAATgcttaagaggaaaaaaaataactgattaataaaaaaacaaatcatgccCATGGTCTGTTGTCTGATACACTTGAGcagaatataacaaaaaaatctcTTGAAAATTGTCAAGGGAATTGCTTTTGGGGAAGATTCGAATCCTCAAATATTGGCCGGAATGGTGACTTTCAGATTAATATCATCcacctattaaaaaaaaagaaaccatccCTTAACATTCCTGTTTGTTATGgtacaaatataaaacataattttttaaattatatattttgtaaattgtgACTTGTTTGATTTTATAAGGGTTGCATTTACAATAGTATGTCCTACAGATGGGTTTCCCAAAATGTACAAGTTAAGGGTAGGACATATCTAAACATATCTTTCTTGGTTAACCACTGATGTTACCAAGCCTTTACTGTTGGGTCCACACTATTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU444155 True 1305 lncRNA 0.32 1 12624928 12626232

Neighbor

gene id symbol gene type direction distance location
dpcd dpcd coding upstream 42775 12578328 ~ 12582153 (+)
LOC113537718 NA coding upstream 62094 12555158 ~ 12562834 (+)
nt5c2b nt5c2b,LOC108258961,LOC108435980,LOC107602759,LOC107704322,LOC107738462,LOC105891044,LOC107568788 coding upstream 123400 12474299 ~ 12501528 (+)
LOC113537720 NA coding upstream 183246 12437914 ~ 12441682 (+)
LOC117596105 LOC108258304,LOC108258298 coding upstream 187070 12432936 ~ 12437858 (+)
anos1a anos1,LOC108428190 coding downstream 47761 12673993 ~ 12697315 (+)
sts sts coding downstream 100268 12726500 ~ 12738663 (+)
pudp pudp,LOC107681515,LOC107571754,LOC107691609 coding downstream 199718 12825950 ~ 12850197 (+)
nlgn4xa nlgn4x,nlgn4a,LOC107708671,LOC107724264,LOC107602764 coding downstream 283590 12909822 ~ 12990095 (+)
prkx prkx,LOC106575200 coding downstream 607652 13233884 ~ 13270417 (+)
G374985 LOC108258315,LOC108435981,LOC107708677,LOC107704309,LOC107568787 non-coding upstream 90629 12533805 ~ 12534299 (+)
G374971 NA non-coding upstream 120769 12502484 ~ 12504159 (+)
LOC113537659 NA non-coding upstream 218868 12404640 ~ 12406060 (+)
G374746 NA non-coding upstream 474738 12149923 ~ 12150190 (+)
G374744 NA non-coding upstream 480274 12144433 ~ 12144654 (+)
G375052 NA non-coding downstream 1874 12628106 ~ 12628343 (+)
G375053 NA non-coding downstream 3321 12629553 ~ 12631230 (+)
G375120 NA non-coding downstream 115504 12741736 ~ 12741947 (+)
G375238 NA non-coding downstream 408978 13035210 ~ 13035502 (+)
G375249 NA non-coding downstream 467990 13094222 ~ 13094421 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 498733 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 1556926 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 1615308 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 2365397 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 2748375 9839096 ~ 9876553 (+)
gpalpp1 gpalpp1 other downstream 1390291 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 1397018 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 1732510 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 2453455 15079687 ~ 15099905 (+)
smdt1b NA other downstream 2488235 15114467 ~ 15116878 (+)

Expression


Co-expression Network