G374746


Basic Information

Item Value
gene id G374746
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12149923 ~ 12150190 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU443811
gacattttgtttgttcCATCAGTTCATTTGGAACAGTGTGCTACCATGGGGATGGGAAACCTCATGCCCGAGGCCATGATTGACTAATAACAGGAAAGGTTTTGAATGGTTGGTTAATGTCTCCACTGTGCTTCAGGTTAAGACTCATGCCCAGAATGATACCATGTAGACCGAATTATATTTACCGAGTCATAAACACACAGCCAGGAGGCACACATTCACTCTTTGAAATGTGAATGATGATGAGCCTTGCGTGTGTCATTTCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU443811 True 268 lncRNA 0.43 1 12149923 12150190

Neighbor

gene id symbol gene type direction distance location
bora bora,LOC107556689 coding upstream 57669 12084060 ~ 12092254 (+)
gpr183b LOC108259007 coding upstream 173050 11972905 ~ 11976873 (+)
tmem41ab tmem41a,tmem41ab,LOC107588818,LOC107556698,LOC107732701,LOC107704344 coding upstream 263585 11877160 ~ 11886338 (+)
c26h3orf70 c26h3orf70,cunh3orf70 coding upstream 394807 11729545 ~ 11755116 (+)
pcca pcca,LOC107707835,LOC106594657 coding upstream 483290 11620634 ~ 11666633 (+)
itga6b LOC108258655 coding downstream 12814 12163004 ~ 12191808 (+)
eef1a1b eef1a1b,LOC108258313,LOC108441988,LOC107704332,LOC107602754,LOC107708683,LOC107693767,LOC108263602 coding downstream 75279 12225469 ~ 12230678 (+)
LOC117596105 LOC108258304,LOC108258298 coding downstream 282746 12432936 ~ 12437858 (+)
LOC113537720 NA coding downstream 287724 12437914 ~ 12441682 (+)
nt5c2b nt5c2b,LOC108258961,LOC108435980,LOC107602759,LOC107704322,LOC107738462,LOC105891044,LOC107568788 coding downstream 324109 12474299 ~ 12501528 (+)
G374744 NA non-coding upstream 5269 12144433 ~ 12144654 (+)
LOC113537502 NA non-coding upstream 8181 12136682 ~ 12141742 (+)
G374585 NA non-coding upstream 237021 11896908 ~ 11912902 (+)
LOC117596172 NA non-coding upstream 432481 11709224 ~ 11717442 (+)
LOC117596158 NA non-coding upstream 459161 11689509 ~ 11690762 (+)
LOC113537659 NA non-coding downstream 254450 12404640 ~ 12406060 (+)
G374971 NA non-coding downstream 352294 12502484 ~ 12504159 (+)
G374985 LOC108258315,LOC108435981,LOC107708677,LOC107704309,LOC107568787 non-coding downstream 383615 12533805 ~ 12534299 (+)
G375051 NA non-coding downstream 474738 12624928 ~ 12626232 (+)
G375052 NA non-coding downstream 477916 12628106 ~ 12628343 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 23728 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 1081921 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 1140303 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 1890392 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 2273370 9839096 ~ 9876553 (+)
gpalpp1 gpalpp1 other downstream 1866333 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 1873060 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 2208552 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 2929497 15079687 ~ 15099905 (+)
smdt1b NA other downstream 2964277 15114467 ~ 15116878 (+)

Expression


Co-expression Network