eef1a1b (eef1a1b,LOC108258313,LOC108441988,LOC107704332,LOC107602754,LOC107708683,LOC107693767,LOC108263602)


Basic Information

Item Value
gene id eef1a1b
gene name eef1a1b,LOC108258313,LOC108441988,LOC107704332,LOC107602754,LOC107708683,LOC107693767,LOC108263602
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12225469 ~ 12230678 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931989.2
TCTGAGAGACGTCATCGGCGGTATCTAAGCCTCTGTACAGTATCTGAGGGAAGCGACCGTCGTCAGTATATCCGGCTGCTGCTGCGTCAGGCCTCCAGCATCGCCCTCAAGACTCaattactgtactgtaatcCTACAAACCCAAAGCTATGGGAAAGGAAAAGCTCCACATCAATATAGTGGTCATTGGCCATGTGGACTCTGGGAAGTCCACCACCACTGGGCATCTCATCTACAAGTGTGGTGGCATCGACAAGAGGACCATTGAAAAGTTTGAGAAGGAGGCTGCTGAGatgGGTAAAGGTTCTTTTAAGTATGCATGGGTTCTGGATAAGCTGAAGGCTGAGCGGGAGCGGGGCATCACAATTGATATCTCCCTCTGGAAGTTTGAGACCAGCAAGTACTACGTCACCATCATTGATGCCCCTGGACACAGAGATTTTATTAAGAACATGATCACTGGTACCTCCCAGGCGGACTGTGCTGTGCTAATCGTGGCAGCAGGAGTGGGCGAGTTTGAAGCCGGCATCTCGAAGAACGGTCAGACCCGAGAGCATGCCCTGCTGGCATACACGCTCGGTGTGAAGCAGCTGATCGTGGGCGTCAACAAGATGGACTCCACAGAACCTAATTACAGCCAGAAGCGCTATGAGGAGATTGTGAAGGAAGTCAGCACCTACATCAAGAAGATTGGCTACAACCCTGAAACAGTGGCCTTTGTGCCGATCTCTGGCTGGAACGGAGATAACATGCTTGAGGCTAGCCCAAATATGACCTGGTTTAAGGGATGGAAGATCAACCGCAAGGAAGGGAGCGTCTCAGGAACGACTCTATTAGAGGCTCTGGATGCCATTCAGCCTCCAACCCGGCCAACTGACAAACCACTGCGCCTCCCACTCCAGGATGTTTACAAGATTGGAGGTATTGGTACAGTCCCAGTTGGTCGCGTTGAGACCGGCATCCTGAAACCTGGCATGGTTGTGACATTTGCCCCTGTGAATGTGACCACTGAGGTTAAGTCTGTAGAAATGCATCACGAGGCCTTGTCTGAGGCGCTGCCTGGTGATAATGTGGGATTTAATGTGAAAAACGTCTCCGTTAAGGACATCCGTCGTGGGAATGTCGCAGGAGATAGCAAGAATGACCCTCCACAGGAAGCTGCTACCTTCACTGCACAGGTCATCATCCTGAACCACCCTGGCCAGATCAGCGCTGGCTATGCTCCAGTGCTGGACTGCCACACGGCCCACATCGCCTGCAAGTTTGCTGAGCTGAAGGAGAAGATTGACCGTCGTTCAGGGAAGAAGCTGGAGGACAACCCCAAATCGCTCAAGTCTGGTGATGCTGCCATTGTGGACATGATCCCGGGCAAGCCCATGTGTGTGGAGAGCTTCTCTGAGTACCCACCTCTCGGGCGCTTTGCTGTACGTGACATGCGTCAGACTGTGGCAGTGGGCGTCATTAAGGGCGTGGAGAAGAAGACGCCCACTTCAGGCAAGATCACCAAGTCTGCCCAGAAGGCCCAGAAGAACAAATGAATATTGTGCAGGGCTGCAACCTCTCGAGTCAGCCACAGCAGAATCCACGTCATCCATCCGCTCCTTAGCTTAATAGTCAAAGCCTGGCAAATTATCACAATGCATCGCAAGAGTAGACGAAGGAAAAAACCCACAACCACTCTAACAGTTATgatgttaattaatatattataccATTGTATTTATGGTTTCAAGTTTCTAGTCTGAATTGTCAGTTGATGTTCTGTGGATATTTATCAGCACCTTACACTAGAGTTTAGATTAAGGACAGGAAAAGTGATTGTTTCTATCTTCTCTGCTTGATGTGCAGTAGTATGAGAACCTTTCCCAGTCCTGACAAGCCATgtagctaatgttgctaatgtGATCTGGCATGCAAGCGCAGTCAGCCTTTTCTGCTTCTTGTAGTcaaggattttttattttattttattttttgtacgTTGGTCCGTATTGAGCTGATGTGTTGTGACATAGCTTTAAAATTTAGTGTCTTTCCTGGCTGCATGCATGAAGCTTCCCTAGCTAGTGCACTTTACTGAGACTCCCTTAGCACTTTGAGAAAGCACGAGCTAAATACTTTGCACTTGCACTCATGTACTTTAACATATGGACATATATTTCTCCATAAGCTCATATAACATggataaacaataaaaaaaacccattgagcactca
>XM_026931990.2
TCTGAGAGACGTCATCGGCGGTATCTAAGCCTCTGTACAGTATCTGAGGGAAGCGACCGTCGTCAGTATATCCGGCTGCTGCTGCGTCAGGCCTCCAGCATCGCCCTCAAGGTCGGACATTACATAAATCCTACTCaattactgtactgtaatcCTACAAACCCAAAGCTATGGGAAAGGAAAAGCTCCACATCAATATAGTGGTCATTGGCCATGTGGACTCTGGGAAGTCCACCACCACTGGGCATCTCATCTACAAGTGTGGTGGCATCGACAAGAGGACCATTGAAAAGTTTGAGAAGGAGGCTGCTGAGatgGGTAAAGGTTCTTTTAAGTATGCATGGGTTCTGGATAAGCTGAAGGCTGAGCGGGAGCGGGGCATCACAATTGATATCTCCCTCTGGAAGTTTGAGACCAGCAAGTACTACGTCACCATCATTGATGCCCCTGGACACAGAGATTTTATTAAGAACATGATCACTGGTACCTCCCAGGCGGACTGTGCTGTGCTAATCGTGGCAGCAGGAGTGGGCGAGTTTGAAGCCGGCATCTCGAAGAACGGTCAGACCCGAGAGCATGCCCTGCTGGCATACACGCTCGGTGTGAAGCAGCTGATCGTGGGCGTCAACAAGATGGACTCCACAGAACCTAATTACAGCCAGAAGCGCTATGAGGAGATTGTGAAGGAAGTCAGCACCTACATCAAGAAGATTGGCTACAACCCTGAAACAGTGGCCTTTGTGCCGATCTCTGGCTGGAACGGAGATAACATGCTTGAGGCTAGCCCAAATATGACCTGGTTTAAGGGATGGAAGATCAACCGCAAGGAAGGGAGCGTCTCAGGAACGACTCTATTAGAGGCTCTGGATGCCATTCAGCCTCCAACCCGGCCAACTGACAAACCACTGCGCCTCCCACTCCAGGATGTTTACAAGATTGGAGGTATTGGTACAGTCCCAGTTGGTCGCGTTGAGACCGGCATCCTGAAACCTGGCATGGTTGTGACATTTGCCCCTGTGAATGTGACCACTGAGGTTAAGTCTGTAGAAATGCATCACGAGGCCTTGTCTGAGGCGCTGCCTGGTGATAATGTGGGATTTAATGTGAAAAACGTCTCCGTTAAGGACATCCGTCGTGGGAATGTCGCAGGAGATAGCAAGAATGACCCTCCACAGGAAGCTGCTACCTTCACTGCACAGGTCATCATCCTGAACCACCCTGGCCAGATCAGCGCTGGCTATGCTCCAGTGCTGGACTGCCACACGGCCCACATCGCCTGCAAGTTTGCTGAGCTGAAGGAGAAGATTGACCGTCGTTCAGGGAAGAAGCTGGAGGACAACCCCAAATCGCTCAAGTCTGGTGATGCTGCCATTGTGGACATGATCCCGGGCAAGCCCATGTGTGTGGAGAGCTTCTCTGAGTACCCACCTCTCGGGCGCTTTGCTGTACGTGACATGCGTCAGACTGTGGCAGTGGGCGTCATTAAGGGCGTGGAGAAGAAGACGCCCACTTCAGGCAAGATCACCAAGTCTGCCCAGAAGGCCCAGAAGAACAAATGAATATTGTGCAGGGCTGCAACCTCTCGAGTCAGCCACAGCAGAATCCACGTCATCCATCCGCTCCTTAGCTTAATAGTCAAAGCCTGGCAAATTATCACAATGCATCGCAAGAGTAGACGAAGGAAAAAACCCACAACCACTCTAACAGTTATgatgttaattaatatattataccATTGTATTTATGGTTTCAAGTTTCTAGTCTGAATTGTCAGTTGATGTTCTGTGGATATTTATCAGCACCTTACACTAGAGTTTAGATTAAGGACAGGAAAAGTGATTGTTTCTATCTTCTCTGCTTGATGTGCAGTAGTATGAGAACCTTTCCCAGTCCTGACAAGCCATgtagctaatgttgctaatgtGATCTGGCATGCAAGCGCAGTCAGCCTTTTCTGCTTCTTGTAGTcaaggattttttattttattttattttttgtacgTTGGTCCGTATTGAGCTGATGTGTTGTGACATAGCTTTAAAATTTAGTGTCTTTCCTGGCTGCATGCATGAAGCTTCCCTAGCTAGTGCACTTTACTGAGACTCCCTTAGCACTTTGAGAAAGCACGAGCTAAATACTTTGCACTTGCACTCATGTACTTTAACATATGGACATATATTTCTCCATAAGCTCATATAACATggataaacaataaaaaaaacccattgagcactca
>XM_026931991.2
TTTATCacatatgaacatttttatgcGCCATTGTTGCTCGTCTCTGCAGTTTAAACTGCTCTGTATtttactgcgtgtgtgtgtgtgtgtgtgtgtgtgagagagacagagagaaattgTGAACGCAGCATGTGAGACTCaattactgtactgtaatcCTACAAACCCAAAGCTATGGGAAAGGAAAAGCTCCACATCAATATAGTGGTCATTGGCCATGTGGACTCTGGGAAGTCCACCACCACTGGGCATCTCATCTACAAGTGTGGTGGCATCGACAAGAGGACCATTGAAAAGTTTGAGAAGGAGGCTGCTGAGatgGGTAAAGGTTCTTTTAAGTATGCATGGGTTCTGGATAAGCTGAAGGCTGAGCGGGAGCGGGGCATCACAATTGATATCTCCCTCTGGAAGTTTGAGACCAGCAAGTACTACGTCACCATCATTGATGCCCCTGGACACAGAGATTTTATTAAGAACATGATCACTGGTACCTCCCAGGCGGACTGTGCTGTGCTAATCGTGGCAGCAGGAGTGGGCGAGTTTGAAGCCGGCATCTCGAAGAACGGTCAGACCCGAGAGCATGCCCTGCTGGCATACACGCTCGGTGTGAAGCAGCTGATCGTGGGCGTCAACAAGATGGACTCCACAGAACCTAATTACAGCCAGAAGCGCTATGAGGAGATTGTGAAGGAAGTCAGCACCTACATCAAGAAGATTGGCTACAACCCTGAAACAGTGGCCTTTGTGCCGATCTCTGGCTGGAACGGAGATAACATGCTTGAGGCTAGCCCAAATATGACCTGGTTTAAGGGATGGAAGATCAACCGCAAGGAAGGGAGCGTCTCAGGAACGACTCTATTAGAGGCTCTGGATGCCATTCAGCCTCCAACCCGGCCAACTGACAAACCACTGCGCCTCCCACTCCAGGATGTTTACAAGATTGGAGGTATTGGTACAGTCCCAGTTGGTCGCGTTGAGACCGGCATCCTGAAACCTGGCATGGTTGTGACATTTGCCCCTGTGAATGTGACCACTGAGGTTAAGTCTGTAGAAATGCATCACGAGGCCTTGTCTGAGGCGCTGCCTGGTGATAATGTGGGATTTAATGTGAAAAACGTCTCCGTTAAGGACATCCGTCGTGGGAATGTCGCAGGAGATAGCAAGAATGACCCTCCACAGGAAGCTGCTACCTTCACTGCACAGGTCATCATCCTGAACCACCCTGGCCAGATCAGCGCTGGCTATGCTCCAGTGCTGGACTGCCACACGGCCCACATCGCCTGCAAGTTTGCTGAGCTGAAGGAGAAGATTGACCGTCGTTCAGGGAAGAAGCTGGAGGACAACCCCAAATCGCTCAAGTCTGGTGATGCTGCCATTGTGGACATGATCCCGGGCAAGCCCATGTGTGTGGAGAGCTTCTCTGAGTACCCACCTCTCGGGCGCTTTGCTGTACGTGACATGCGTCAGACTGTGGCAGTGGGCGTCATTAAGGGCGTGGAGAAGAAGACGCCCACTTCAGGCAAGATCACCAAGTCTGCCCAGAAGGCCCAGAAGAACAAATGAATATTGTGCAGGGCTGCAACCTCTCGAGTCAGCCACAGCAGAATCCACGTCATCCATCCGCTCCTTAGCTTAATAGTCAAAGCCTGGCAAATTATCACAATGCATCGCAAGAGTAGACGAAGGAAAAAACCCACAACCACTCTAACAGTTATgatgttaattaatatattataccATTGTATTTATGGTTTCAAGTTTCTAGTCTGAATTGTCAGTTGATGTTCTGTGGATATTTATCAGCACCTTACACTAGAGTTTAGATTAAGGACAGGAAAAGTGATTGTTTCTATCTTCTCTGCTTGATGTGCAGTAGTATGAGAACCTTTCCCAGTCCTGACAAGCCATgtagctaatgttgctaatgtGATCTGGCATGCAAGCGCAGTCAGCCTTTTCTGCTTCTTGTAGTcaaggattttttattttattttattttttgtacgTTGGTCCGTATTGAGCTGATGTGTTGTGACATAGCTTTAAAATTTAGTGTCTTTCCTGGCTGCATGCATGAAGCTTCCCTAGCTAGTGCACTTTACTGAGACTCCCTTAGCACTTTGAGAAAGCACGAGCTAAATACTTTGCACTTGCACTCATGTACTTTAACATATGGACATATATTTCTCCATAAGCTCATATAACATggataaacaataaaaaaaacccattgagcactca
>XM_034299972.1
TCGGCGGTATCTAAGCCTCTGTACAGTATCTGAGGGAAGCGACCGTCGTCAGTATATCCGGCTGCTGCTGCGTCAGGCCTCCAGCATCGCCCTCAAGCTATGGGAAAGGAAAAGCTCCACATCAATATAGTGGTCATTGGCCATGTGGACTCTGGGAAGTCCACCACCACTGGGCATCTCATCTACAAGTGTGGTGGCATCGACAAGAGGACCATTGAAAAGTTTGAGAAGGAGGCTGCTGAGatgGGTAAAGGTTCTTTTAAGTATGCATGGGTTCTGGATAAGCTGAAGGCTGAGCGGGAGCGGGGCATCACAATTGATATCTCCCTCTGGAAGTTTGAGACCAGCAAGTACTACGTCACCATCATTGATGCCCCTGGACACAGAGATTTTATTAAGAACATGATCACTGGTACCTCCCAGGCGGACTGTGCTGTGCTAATCGTGGCAGCAGGAGTGGGCGAGTTTGAAGCCGGCATCTCGAAGAACGGTCAGACCCGAGAGCATGCCCTGCTGGCATACACGCTCGGTGTGAAGCAGCTGATCGTGGGCGTCAACAAGATGGACTCCACAGAACCTAATTACAGCCAGAAGCGCTATGAGGAGATTGTGAAGGAAGTCAGCACCTACATCAAGAAGATTGGCTACAACCCTGAAACAGTGGCCTTTGTGCCGATCTCTGGCTGGAACGGAGATAACATGCTTGAGGCTAGCCCAAATATGACCTGGTTTAAGGGATGGAAGATCAACCGCAAGGAAGGGAGCGTCTCAGGAACGACTCTATTAGAGGCTCTGGATGCCATTCAGCCTCCAACCCGGCCAACTGACAAACCACTGCGCCTCCCACTCCAGGATGTTTACAAGATTGGAGGTATTGGTACAGTCCCAGTTGGTCGCGTTGAGACCGGCATCCTGAAACCTGGCATGGTTGTGACATTTGCCCCTGTGAATGTGACCACTGAGGTTAAGTCTGTAGAAATGCATCACGAGGCCTTGTCTGAGGCGCTGCCTGGTGATAATGTGGGATTTAATGTGAAAAACGTCTCCGTTAAGGACATCCGTCGTGGGAATGTCGCAGGAGATAGCAAGAATGACCCTCCACAGGAAGCTGCTACCTTCACTGCACAGGTCATCATCCTGAACCACCCTGGCCAGATCAGCGCTGGCTATGCTCCAGTGCTGGACTGCCACACGGCCCACATCGCCTGCAAGTTTGCTGAGCTGAAGGAGAAGATTGACCGTCGTTCAGGGAAGAAGCTGGAGGACAACCCCAAATCGCTCAAGTCTGGTGATGCTGCCATTGTGGACATGATCCCGGGCAAGCCCATGTGTGTGGAGAGCTTCTCTGAGTACCCACCTCTCGGGCGCTTTGCTGTACGTGACATGCGTCAGACTGTGGCAGTGGGCGTCATTAAGGGCGTGGAGAAGAAGACGCCCACTTCAGGCAAGATCACCAAGTCTGCCCAGAAGGCCCAGAAGAACAAATGAATATTGTGCAGGGCTGCAACCTCTCGAGTCAGCCACAGCAGAATCCACGTCATCCATCCGCTCCTTAGCTTAATAGTCAAAGCCTGGCAAATTATCACAATGCATCGCAAGAGTAGACGAAGGAAAAAACCCACAACCACTCTAACAGTTATgatgttaattaatatattataccATTGTATTTATGGTTTCAAGTTTCTAGTCTGAATTGTCAGTTGATGTTCTGTGGATATTTATCAGCACCTTACACTAGAGTTTAGATTAAGGACAGGAAAAGTGATTGTTTCTATCTTCTCTGCTTGATGTGCAGTAGTATGAGAACCTTTCCCAGTCCTGACAAGCCATgtagctaatgttgctaatgtGATCTGGCATGCAAGCGCAGTCAGCCTTTTCTGCTTCTTGTAGTcaaggattttttattttattttattttttgtacgTTGGTCCGTATTGAGCTGATGTGTTGTGACATAGCTTTAAAATTTAGTGTCTTTCCTGGCTGCATGCATGAAGCTTCCCTAGCTAGTGCACTTTACTGAGACTCCCTTAGCACTTTGAGAAAGCACGAGCTAAATACTTTGCACTTGCACTCATGTACTTTAACATATGGACATATATTTCTCCATAAGCTCATATAACATggataaacaataaaaaaaacccattgagcactca

Function

symbol description
eef1a1b Predicted to enable GTP binding activity; GTPase activity; and translation elongation factor activity. Predicted to act upstream of or within translational elongation. Is expressed in brain; liver; muscle; and pleuroperitoneal region. Orthologous to several human genes including EEF1A1 (eukaryotic translation elongation factor 1 alpha 1).

NR:

description
PREDICTED: elongation factor 1-alpha 1-like

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931989.2 False 2216 mRNA 0.48 8 12225469 12230678
XM_026931990.2 False 2237 mRNA 0.48 8 12225469 12230678
XM_026931991.2 True 2241 mRNA 0.47 8 12225607 12230678
XM_034299972.1 False 2166 mRNA 0.48 8 12225483 12230678

Neighbor

gene id symbol gene type direction distance location
itga6b LOC108258655 coding upstream 33661 12163004 ~ 12191808 (+)
bora bora,LOC107556689 coding upstream 133215 12084060 ~ 12092254 (+)
gpr183b LOC108259007 coding upstream 248596 11972905 ~ 11976873 (+)
tmem41ab tmem41a,tmem41ab,LOC107588818,LOC107556698,LOC107732701,LOC107704344 coding upstream 339131 11877160 ~ 11886338 (+)
c26h3orf70 c26h3orf70,cunh3orf70 coding upstream 470353 11729545 ~ 11755116 (+)
LOC117596105 LOC108258304,LOC108258298 coding downstream 202258 12432936 ~ 12437858 (+)
LOC113537720 NA coding downstream 207236 12437914 ~ 12441682 (+)
nt5c2b nt5c2b,LOC108258961,LOC108435980,LOC107602759,LOC107704322,LOC107738462,LOC105891044,LOC107568788 coding downstream 243621 12474299 ~ 12501528 (+)
LOC113537718 NA coding downstream 324480 12555158 ~ 12562834 (+)
dpcd dpcd coding downstream 347650 12578328 ~ 12582153 (+)
G374746 NA non-coding upstream 75279 12149923 ~ 12150190 (+)
G374744 NA non-coding upstream 80815 12144433 ~ 12144654 (+)
LOC113537502 NA non-coding upstream 83727 12136682 ~ 12141742 (+)
G374585 NA non-coding upstream 312567 11896908 ~ 11912902 (+)
LOC117596172 NA non-coding upstream 508027 11709224 ~ 11717442 (+)
LOC113537659 NA non-coding downstream 173962 12404640 ~ 12406060 (+)
G374971 NA non-coding downstream 271806 12502484 ~ 12504159 (+)
G374985 LOC108258315,LOC108435981,LOC107708677,LOC107704309,LOC107568787 non-coding downstream 303127 12533805 ~ 12534299 (+)
G375051 NA non-coding downstream 394250 12624928 ~ 12626232 (+)
G375052 NA non-coding downstream 397428 12628106 ~ 12628343 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 99274 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 1157467 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 1215849 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 1965938 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 2348916 9839096 ~ 9876553 (+)
gpalpp1 gpalpp1 other downstream 1785845 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 1792572 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 2128064 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 2849009 15079687 ~ 15099905 (+)
smdt1b NA other downstream 2883789 15114467 ~ 15116878 (+)

Expression


Co-expression Network