RNA id: XM_034299972.1


Basic Information

Item Value
RNA id XM_034299972.1
length 2166
RNA type mRNA
GC content 0.48
exon number 8
gene id eef1a1b
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12225469 ~ 12230678 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGGCGGTATCTAAGCCTCTGTACAGTATCTGAGGGAAGCGACCGTCGTCAGTATATCCGGCTGCTGCTGCGTCAGGCCTCCAGCATCGCCCTCAAGCTATGGGAAAGGAAAAGCTCCACATCAATATAGTGGTCATTGGCCATGTGGACTCTGGGAAGTCCACCACCACTGGGCATCTCATCTACAAGTGTGGTGGCATCGACAAGAGGACCATTGAAAAGTTTGAGAAGGAGGCTGCTGAGatgGGTAAAGGTTCTTTTAAGTATGCATGGGTTCTGGATAAGCTGAAGGCTGAGCGGGAGCGGGGCATCACAATTGATATCTCCCTCTGGAAGTTTGAGACCAGCAAGTACTACGTCACCATCATTGATGCCCCTGGACACAGAGATTTTATTAAGAACATGATCACTGGTACCTCCCAGGCGGACTGTGCTGTGCTAATCGTGGCAGCAGGAGTGGGCGAGTTTGAAGCCGGCATCTCGAAGAACGGTCAGACCCGAGAGCATGCCCTGCTGGCATACACGCTCGGTGTGAAGCAGCTGATCGTGGGCGTCAACAAGATGGACTCCACAGAACCTAATTACAGCCAGAAGCGCTATGAGGAGATTGTGAAGGAAGTCAGCACCTACATCAAGAAGATTGGCTACAACCCTGAAACAGTGGCCTTTGTGCCGATCTCTGGCTGGAACGGAGATAACATGCTTGAGGCTAGCCCAAATATGACCTGGTTTAAGGGATGGAAGATCAACCGCAAGGAAGGGAGCGTCTCAGGAACGACTCTATTAGAGGCTCTGGATGCCATTCAGCCTCCAACCCGGCCAACTGACAAACCACTGCGCCTCCCACTCCAGGATGTTTACAAGATTGGAGGTATTGGTACAGTCCCAGTTGGTCGCGTTGAGACCGGCATCCTGAAACCTGGCATGGTTGTGACATTTGCCCCTGTGAATGTGACCACTGAGGTTAAGTCTGTAGAAATGCATCACGAGGCCTTGTCTGAGGCGCTGCCTGGTGATAATGTGGGATTTAATGTGAAAAACGTCTCCGTTAAGGACATCCGTCGTGGGAATGTCGCAGGAGATAGCAAGAATGACCCTCCACAGGAAGCTGCTACCTTCACTGCACAGGTCATCATCCTGAACCACCCTGGCCAGATCAGCGCTGGCTATGCTCCAGTGCTGGACTGCCACACGGCCCACATCGCCTGCAAGTTTGCTGAGCTGAAGGAGAAGATTGACCGTCGTTCAGGGAAGAAGCTGGAGGACAACCCCAAATCGCTCAAGTCTGGTGATGCTGCCATTGTGGACATGATCCCGGGCAAGCCCATGTGTGTGGAGAGCTTCTCTGAGTACCCACCTCTCGGGCGCTTTGCTGTACGTGACATGCGTCAGACTGTGGCAGTGGGCGTCATTAAGGGCGTGGAGAAGAAGACGCCCACTTCAGGCAAGATCACCAAGTCTGCCCAGAAGGCCCAGAAGAACAAATGAATATTGTGCAGGGCTGCAACCTCTCGAGTCAGCCACAGCAGAATCCACGTCATCCATCCGCTCCTTAGCTTAATAGTCAAAGCCTGGCAAATTATCACAATGCATCGCAAGAGTAGACGAAGGAAAAAACCCACAACCACTCTAACAGTTATgatgttaattaatatattataccATTGTATTTATGGTTTCAAGTTTCTAGTCTGAATTGTCAGTTGATGTTCTGTGGATATTTATCAGCACCTTACACTAGAGTTTAGATTAAGGACAGGAAAAGTGATTGTTTCTATCTTCTCTGCTTGATGTGCAGTAGTATGAGAACCTTTCCCAGTCCTGACAAGCCATgtagctaatgttgctaatgtGATCTGGCATGCAAGCGCAGTCAGCCTTTTCTGCTTCTTGTAGTcaaggattttttattttattttattttttgtacgTTGGTCCGTATTGAGCTGATGTGTTGTGACATAGCTTTAAAATTTAGTGTCTTTCCTGGCTGCATGCATGAAGCTTCCCTAGCTAGTGCACTTTACTGAGACTCCCTTAGCACTTTGAGAAAGCACGAGCTAAATACTTTGCACTTGCACTCATGTACTTTAACATATGGACATATATTTCTCCATAAGCTCATATAACATggataaacaataaaaaaaacccattgagcactca

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443811 lncRNA upstream 75293 12149923 ~ 12150190 (+) True G374746
TU443809 lncRNA upstream 80829 12144433 ~ 12144654 (+) True G374744
TU443806 lncRNA upstream 83741 12136682 ~ 12141742 (+) True LOC113537502
XR_003403768.2 lncRNA upstream 83747 12136682 ~ 12141736 (+) False LOC113537502
TU443794 lncRNA upstream 99288 12125344 ~ 12126195 (+) False metap1d
XR_003403785.2 lncRNA downstream 173962 12404640 ~ 12406051 (+) True LOC113537659
TU444037 lncRNA downstream 173975 12404653 ~ 12406060 (+) False LOC113537659
TU444059 lncRNA downstream 271806 12502484 ~ 12504159 (+) True G374971
TU444073 lncRNA downstream 303127 12533805 ~ 12534299 (+) True G374985
TU444155 lncRNA downstream 394250 12624928 ~ 12626232 (+) True G375051
XM_026931981.2 mRNA upstream 33675 12163004 ~ 12191808 (+) True itga6b
XM_026931980.2 mRNA upstream 33675 12163004 ~ 12191808 (+) False itga6b
XM_026931996.2 mRNA upstream 99925 12109571 ~ 12125558 (+) True metap1d
XM_034300417.1 mRNA upstream 101469 12109571 ~ 12124014 (+) False metap1d
XM_026931988.2 mRNA upstream 133229 12084060 ~ 12092254 (+) True bora
XM_034299878.1 mRNA downstream 202258 12432936 ~ 12437858 (+) True LOC117596105
XM_034300295.1 mRNA downstream 207236 12437914 ~ 12441682 (+) True LOC113537720
XM_026931838.2 mRNA downstream 243621 12474299 ~ 12501528 (+) True nt5c2b
XM_026931837.2 mRNA downstream 243621 12474299 ~ 12501528 (+) False nt5c2b
XM_026931839.2 mRNA downstream 259740 12490418 ~ 12501528 (+) False nt5c2b
TU442901 other upstream 1215863 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 2348930 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 4071628 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 5506657 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 7017752 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 1785845 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 1792572 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 2849062 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 2883794 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 3118576 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile