RNA id: TU443809


Basic Information

Item Value
RNA id TU443809
length 222
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G374744
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12144433 ~ 12144654 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGAGTTCAACAAGTCAGTTTCTTTTATCAGTACAGGGAAACATCAAAATTCCTGTGGTAATCACACCAACACTACAGATGTAGTGGATTGGGAGTTTAAGTTAAAAATGCTGAAGTATTTCATTAAGGCTAGGAGTTTGTGGTTCATATAAAAGGATTCAGAACTCTGAAATCAAAAACAACTGCTACAAAAATCATGAGATCATTTTGACTACATCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443806 lncRNA upstream 2691 12136682 ~ 12141742 (+) True LOC113537502
XR_003403768.2 lncRNA upstream 2697 12136682 ~ 12141736 (+) False LOC113537502
TU443794 lncRNA upstream 18238 12125344 ~ 12126195 (+) False metap1d
TU443627 lncRNA upstream 231531 11896908 ~ 11912902 (+) True G374585
XR_004577347.1 lncRNA upstream 426991 11709224 ~ 11717442 (+) True LOC117596172
TU443811 lncRNA downstream 5269 12149923 ~ 12150190 (+) True G374746
XR_003403785.2 lncRNA downstream 259986 12404640 ~ 12406051 (+) True LOC113537659
TU444037 lncRNA downstream 259999 12404653 ~ 12406060 (+) False LOC113537659
TU444059 lncRNA downstream 357830 12502484 ~ 12504159 (+) True G374971
TU444073 lncRNA downstream 389151 12533805 ~ 12534299 (+) True G374985
XM_026931996.2 mRNA upstream 18875 12109571 ~ 12125558 (+) True metap1d
XM_034300417.1 mRNA upstream 20419 12109571 ~ 12124014 (+) False metap1d
XM_026931988.2 mRNA upstream 52179 12084060 ~ 12092254 (+) True bora
XM_026931993.2 mRNA upstream 167560 11972905 ~ 11976873 (+) True gpr183b
XM_026931718.2 mRNA upstream 258095 11877160 ~ 11886338 (+) True tmem41ab
XM_026931981.2 mRNA downstream 18350 12163004 ~ 12191808 (+) True itga6b
XM_026931980.2 mRNA downstream 18350 12163004 ~ 12191808 (+) False itga6b
XM_026931990.2 mRNA downstream 80815 12225469 ~ 12230678 (+) False eef1a1b
XM_026931989.2 mRNA downstream 80815 12225469 ~ 12230678 (+) False eef1a1b
XM_034299972.1 mRNA downstream 80829 12225483 ~ 12230678 (+) False eef1a1b
TU442901 other upstream 1134813 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 2267880 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 3990578 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 5425607 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 6936702 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 1871869 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 1878596 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 2935086 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 2969818 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 3204600 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile