znf654 (znf654)


Basic Information

Item Value
gene id znf654
gene name znf654
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13478822 ~ 13490069 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932040.2
TCGCTCGTATGATCCGTCACGTTTGGTTGAGGTTAACGGTAGCGGCGGTGTGTTGTACGCGCTGGGTTAGACAAGCAGTATGGCGGAAGAAGAGAGTGAATTGGAGTTGGACAGGTTTAAAAAAGAATTGGAGAGTTTGTTAAACGACGAGTGCGGACTGCAAAGCAAGTGGTATTGTGCGAGATTTTGCGAGCTGGTTGAGGAATACACAGGCCGATGGCAGGTGCCCCTTCCACAGCTGCAGGTCCTGAGGAGCGCTCTATGCGCGTTTGTCCGCGGCGCAGCGTCGTTCCCGTCTGATTGTGAGCACGTGCGCTACACTCTGAGTAGTCTGGCTCTGAGTGTCTTCGAGCTGCTGCTATTCTTCGGGAGAGACGAGTTCCCCGAGGATCCTCTAAAAGATATTCTGGACTCATTTCAGGAATGCCACTCAAGTCTAGTGAGGTACCAGAACGTGTACATGCTGCAGGTTAGACACATCATCAGAGATGGAGGGCCATGGGCGAGTCCTGTACTGGAGGGAATCCTAAAGGAAGTGgaacaacaacaagaagaagTGGATCGGTATCTTGGCTCTGAGGTGTCCATGTTCTTCGAGCTGCGTGTACGTTACCTGCTGGCCTGTGAACGGACCCGTGAGGCCATGGCATTAGCCCTGAAGTGCAGTCAGCACCCGACTGCAGGCCGATGCCTGTTCTTCAAGCAGGCTTACCTCTCCTGTCTCTGGAAGTCCTCTCAACAAGAACGCCTCATCATGGAGATGGCAGAGATTGACGGGAAGGATGCAGTGGAGATCCTCTGCATTGCAGAGAATGAGGAAAAGGACGAATTGCTCCTGGAGCTCAGCAGAGGCTTCCTCTTGCAGCAGCTCAGAAGTGGAGATATGTACTACCTTTGGGATCTGGTCTTTATATGGTGTAAACTGTACCTCAGAGTGAAGGCCACGGAAAAACACTTTCTGCAAGAATGCAAACTGTTGCTCCTGTCAGCCACCAACGTAAAAGCAATCTTTCCATTTATGAAGGTGATCTTGGGTGAGCATTTGGGGAAAGAAGGTCTCACGTTTTGCGTCGAGCTCTGTGCCCAGGCCCTTCAGACTGACCTCAAGAACGACCCCGTCACCAAATCTCTCATCTACAAAACCATCGCCTACCTGTTCCCCAACGACCTGGAGATCTGCAGAGCCTGCGCGCTGCTCCTGTTCTTCCTGGAGCGCACGGTTGAGGCCTACAAGACTGTGTTCTTCCTGTACAACCACCCAGACCTTGAGTACCACCTGGACACCGGTCCCGTTGGGAACAACGTGCGCTTCGAGGTGATTCAGATTCTGAAAAAGGGCCTGTTCTTCGACCCTGAATTCTGGAGCCTTCTGAACATCAAAACGAACTGCCTGAAGCTCATGAGCGACGAGGTAGCCAGAGCCGCCCTCCGTGAAATTACGGAAGAGGATAAATGGGCGCCTAGTTACTGTGTCCGAGAGCATTGCAAGTGCCGCGCAGAGCTGGAAAGGACTGTAATCAGACAGGAGTCAAAGCCTGGTAGTAGAGACAAGCAGGAATCTGGGACAGTGGAAAAACAGGTCACGAGTCCTTCTGCTGATGCGTCTTCCGAAGCTCCTCAGTATAAGAGgagagggaggaaaccagggtCACGGATCACAAAGAATCTGGAGCCATTTCCAGTCCGGCGTTCCTTCAGGCAGCTGGATTTGGCACAAAATCATGCCAGGCAGCTGAACAACAGATGTCAGAGGTTCCTCACTCGGCAGACGGAGAAAAATATACTGAAACGGCGGGGCAGGAAACCCCGGTGGCTCCTGGAGCAGTTAGCTGCCCTGGGAGAAAACAGTGCTCCTGGGCAACGGAAGAAACCAGGGAGGAAACCAAAGCTATTCAGCTCGCTAAAGGAGATTTTAGTTGACACGCCAGTCATTGAAATCACAATGGAATATTCCTACCCTGATAATGAGGTTGAGCTGCCTGCTGATGTTCAGGGCCGGTCTGCGTCCAAAATGACTTCTTCCACAGAGCGTCGCTTTGATCAACCTCAAACAACGCCTTGTTGTAAAACTCCAAACTCGCTCCTTCAGATACTGTTAGAGAAGTCTCCTCATTTGTGGAGAGACAAAGAAGACTCTCAGCCGCAGGACGTTATGATTGTTATTAGAAAATTCCACACCTACGCAAAAGTGCCTGAAGAGGAGGAAAGCCCTTCACTTGATCGCCTTACGGATACTGCAGCATTAACAGCTCCACATGCTGTGAAGCAGGAAGAAGATTTTCAGGTTCTTGCGCCTGTAAAGAATCTGAGTGAACCAGTGGAGGGGACTAAAGTGACCTCACtgactgctgctgtaacacaggAGATCCCTGGTGTTAGTGATGGATCTGACCTGTCATTACTTTCACCCGTCGAACAGGCTGTAGTCCCTGATAGCAAAATCACTACGACAGTCAATCCTCCCAAAGATCAAACTGCTAGCGTCATGACTGACAATACTCAAGCGCTGGAAATCACCCAGGAAGTTTCTAATCTTGGTAATACAACTGACAAAGCTACTGATTATATTTGTACTACATCTGAAAAAGGAACAGACATTATTTCTACCTCTGAAAATGCACCTAATACTACACCTGAACTTGCACCCCAAAGTAAAGTTTCTACCCCCAAAGAAATCCCAGACACTCATGAAAATCCACCTGCAGTCACAGAAGTGATAGATGCCTCTAAAAATGCATCAGCAGCTGAAATTCTCAAGACTCCTGCTGTTCTTGAAGAAGTGCAACCTCAAGAAACAGCGTCTCAACAGACCGCTGAGCTCGAGCCATCTCAGAACAGCAGCTCATCTCCTGTATCCAGTGCTCAGACTAACGTGCAACCTAAACACCAATGCAAGCTTTGCAATAAAATATATGAGACTCCTCTGAGTCATGCTTTATGGCATTACCGGACTGAAAAGAAGTGCATGTTTTGTGACAAGCTGGCTTTGACTCGAGGAGCCTTACAGCATTTCCAAAAGCACATCAAAGATTTGAGTAGGGTCGAAGGCCCGCTTGAGACGAAGAAGTGCGAGGATGTACCTCAAGCGACTGGGAGCCCCGATCAGACCGTTCAAGAGTCACCACCGAAAAAAGCAAAGCCTGGATTTGCACAGATCAAGTCAAGACTGCTGATGAGACTGAAACTGACAAGGAAAGCCCAACCTCAGCGTGAGCCAGAGAAAAGCTCTGATAATAGTGGAACACCCTTGAaggagacagacacaaagaagCATGCATCAGCACCAGAGCAAAAAGAGAGCAGCACGAAGGATGATAAGCAGAGCGTCCCACAGGAGACGATAAGATACTTAACAAGAGGTTCGGTTAGGAAGTCTGAGCACAAGGGACGGCTGTGTAGGACGAAGCTAGGCAGGAAAGGAAAGACTAGAAGAGTGATGGCAGGGGGAGATAGTTCAGCGCCCAAGGACGGTTCTGTTCATAGGGTGAATGGAGTAATTAGAAAGAAACGAAAGATGTGGTGTATTCAGGAAGACAGCAGTCGTACCACTGATAAAAATGGACCACCagtaaaagaagagaaaaagaccGATGCAGAGAAATCGGAAAGATAATCAAGTAATAAAGCTCATTATGATATCAGGACCAAAGCAGAAAAGGCAACCAGCAATAATATCGGAGGGGAAAGTAAAAACTGTGCAAAAGCAAAGGCGTTAGAGGAACCAAgagtaaagaagaaaaagctcagagaggatgaggagaaaGTTGATGTAAAAACAGTGAAGAAACGAAAGAATGAAGAAGGTACTTCAACTGCTAAGTCCACAGATACGAAGGAAAAGAAGAACTCTGTTTCAAATGTGGAAAAACAGCAAAACGGAACAGAGGCAGAATCCAGTGAAGCCTCCAAGACAGTGCGGAAGAGGAAATTCAGTAGTACTCCTGCGGTCAGCTGTCCTATAGACGCATGCACGTTCCAAGCCATGCCAGGCCCGGTCCTCTCGCACGTCCTCATACACCACCCGGGCGACACAAAAGctctcgagttcttctacaACCTCGCCGCGAAAAAGTGTCTGTTCTGTGGCAGAAGGATTTGGACTGCTCAGCACTTTTTCGACCATGTTGTTTCTCACCGGGGTAACCTCAAACACCCGTGCTACCACGTGGCCTGCCAGAAGAGATTCAAAACGCGAATGGACGTGGGTGACCATATGGAGAAGGACCATAATCCTCTGAAAGCAGGGTGCTGCTTCCCTGGCTGCACGGTGGAATTTGCCAACCTCAAGGACTTGTACAGCCATGAAAAGAGTCATTACAAAGCAGCTATGCTGAAAAAGGACAAATCAGTAACTTCTGAGAAAGAAGATGTGGACAAACCCAGCCTCAGAGAATCAAGAGTAAAGAGTACTCCAGCGGCAGCACAGCAGACAGCCGAAAGCGTGGCGACAGAGGCTGAGACTCCttctactcctcctcctcctgctcctcctcctcttcctcctcctcttccaccaGGTGACATTATGGAACAGAAGAAGAGCCCGGCACCTGTAACAGTAGAAGATGAAAAACCTttgactttaaataaaagttcagTGAACTACAGCAGCAAGAGCTCCCGGCTCGTCAACGGTCACACTGACCATGCACAAGAATCTAGCATTAAAGCACCCCCTACAGCTCCAAAAGAACAGGAGCCGAAGTACGAGAAGGTGGCAGTTAAGCCGTTCAGCAGACTTCCTCCTTCAGCTTACCTGGACGAGCTGTACCTCAGCATGCCCAAAAAGTGGAGGGGGCCCCAAGCGAGCTCCAAAGGCTCCGATGCAGATGACGTCGTCCCTGTCAAGAGGCAGAGCTGCTCGCGCTGTAACGCGGCCTTCGACTGCGAAGAAGAGCTCCAGCAGCACCGGGAAAAATGCACATCTCTCTTTGGCTTCGATTCAGATGATGAAAATGCCTCCTGAAGAGTAGTGCTCGAAGACGTGGAGCCCATTTGACCTGTTGAACGCTGCTGTGGACATTCAAAAAAATCTCAACTAAAAGgaccattttaataaaaaaagaaggtgCGAAATGGAGCTTGTTTGACCATCTGGACACCTCCCTGCATCGGTTTCTTAACTGTGAGGAATGGGATAATAAATGTCGACTACAGTAGTTCATCTGCTACGATGATCCCAGACTTTAGTGGTTGGAGGTGATGTTCTGCATCACTGACACCACTGTGGATTTGCAGTGTGTGACCGTGTAACAAGCTAGCTACcatgcaaattatttttaaagactgCTGCAGTATTTGATCTGATAATGAAAGCTATAACCTGGTTTAATGCCGGAGGTCGAGAGGATTCTGCCTCAACCTCAACTGCGATTTGACTTTTGCTTCAAGAAGTGTAAGGCATAGATGTAATTGCAATGGCAGTGAAATCTGGGATATTTCCAGCACATTTGGAAAATATCTGGTTATTTGTGAACTTTGTCACGGATTTTATTAACGTTTAACGTTTAATCTCCCAAATCTGGCCATCTTGCATTCCTTGTACTCTAATGAGCAAACCTGTTGCTCATCAGTGATTGAGATTTATCTAAGGATTTGCCTAGTGTGTATTGATTGCCCGGAGGACGACTCAAGTCTTGCAAGCTTAATGAAAGATGAAATGGACACAGAGCAGTGGttgctgaaatattttaaatgaggtATATGTGAAAAACAGACGTATTAATCTGTCTTAAAACAGTTTTGAAAAGTGCTGTGGCAGTCACGCAACCTCTTATGACattaatgtatatatgtttCTAAAGCTCTTCTCTTTACACTCAACAAATAATGAGAAGAATTCAGTGTCTCACACCCGAGGCATGTCTGAGCTGTTCTACGCGAGAGCAGtaatttactaatttaatttattcatattcttttttttttttttctttttgtattttatgtaaatgtttgaaaagtTTGAACGGTATATAATTGGGATGGGTTAATATAGGGGGTTTATATATCAAGAGTTTTTCTGgcctacaaaaacaaaattaaacacatgTATGACAACGGA

Function

symbol description
znf654 Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF654 (zinc finger protein 654).

NR:

description
PREDICTED: uncharacterized protein LOC107691599

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932040.2 True 6064 mRNA 0.47 10 13478822 13490069

Neighbor

gene id symbol gene type direction distance location
htr1fb htr1f,LOC108258890 coding upstream 2761 13454723 ~ 13476061 (+)
chmp2bb chmp2b,chm2b,chmp2bb,LOC107691601,LOC107552237,LOC107654764,LOC107598748 coding upstream 42989 13428573 ~ 13435833 (+)
dhrsx dhrsx,LOC108437760 coding upstream 84042 13353925 ~ 13394780 (+)
mxra5a mxra5 coding upstream 176706 13288826 ~ 13302116 (+)
prkx prkx,LOC106575200 coding upstream 208405 13233884 ~ 13270417 (+)
arl13b arl13b coding downstream 262 13490331 ~ 13502491 (+)
nsun3 nsun3 coding downstream 18004 13508073 ~ 13517770 (+)
epha6 epha6,LOC108258293,LOC108437778,LOC107734575,LOC107757651,LOC107691615 coding downstream 147563 13637632 ~ 13771850 (+)
arl6 arl6,LOC107598745,LOC107654813,LOC107734576,LOC107567991 coding downstream 298493 13788562 ~ 13794334 (+)
slc5a7a LOC108437783,LOC107691621,LOC107655155,LOC107598780,LOC107757643,LOC106586545 coding downstream 312331 13802400 ~ 13812366 (+)
G375431 LOC108258891 non-coding upstream 563 13476476 ~ 13478259 (+)
G375422 NA non-coding upstream 41765 13436647 ~ 13437057 (+)
G375270 NA non-coding upstream 155953 13321273 ~ 13322869 (+)
LOC117596171 NA non-coding upstream 363666 13110314 ~ 13115156 (+)
G375249 NA non-coding upstream 384401 13094222 ~ 13094421 (+)
LOC117596173 NA non-coding downstream 44219 13534288 ~ 13554600 (+)
G375496 NA non-coding downstream 212058 13702127 ~ 13796535 (+)
G375710 NA non-coding downstream 531081 14021150 ~ 14021535 (+)
G375739 NA non-coding downstream 649310 14139379 ~ 14141880 (+)
G375771 NA non-coding downstream 700829 14190898 ~ 14192300 (+)
metap1d metap1d,LOC107719722,LOC107704334,LOC107699077 other upstream 1352627 12109571 ~ 12126195 (+)
LOC113537724 sept3 other upstream 2410820 11062016 ~ 11068002 (+)
G373955 LOC108258951 other upstream 2469202 11006008 ~ 11009620 (+)
pdxkb pdxk,pdxkb,LOC108258310,LOC108428208,LOC103021965,LOC105019670,LOC107376125,LOC106574311 other upstream 3219291 10213033 ~ 10259531 (+)
LOC117596102 sh3pxd2a,sh3pxd2aa,LOC107692111 other upstream 3602269 9839096 ~ 9876553 (+)
gpalpp1 gpalpp1 other downstream 526454 14016523 ~ 14021131 (+)
G375711 tpt1,LOC107734570,LOC107598740 other downstream 533181 14023250 ~ 14042614 (+)
LOC113537358 LOC108258898,LOC108258899 other downstream 868673 14358742 ~ 14360604 (+)
rfx1b LOC108258648,LOC108443334,LOC108239327,LOC102792673,LOC101471697 other downstream 1589618 15079687 ~ 15099905 (+)
smdt1b NA other downstream 1624398 15114467 ~ 15116878 (+)

Expression


Co-expression Network