RNA id: XM_026932268.2


Basic Information

Item Value
RNA id XM_026932268.2
length 3290
RNA type mRNA
GC content 0.50
exon number 7
gene id nlgn4xa
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12909822 ~ 12990095 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCGCGCGCTCTGGGTGAAGTTTAAAAGGATTTCGCAGCTGGTTAACGGTGATGGAGTGAATGCGGCAATCTATTGGCTGTGGGCTTTGTAAATTCCACTCGGCGCAGTCCAATGGCAACTGAGAGAgcgcgagagtgagagagagagagagagagggagagagagagagagaggtccaGCTTTGGTGTCTCTCCCTTTAATCTCTCCGTCTTTCTCTGTAGAAGCAACCTGAATCTCTGCATTTAAATGCTCGAGCGCATTGCATTAATAAACCCGGATCAGCCACACTgtctcttctgttcttctgttcGTCGGACTCTTTggattggatgttttttttttaagcgggGACCGAAGGATTTTTGGGGACTTTGCTTTCTCGTTTGTTGCATGTTCATGTTTGGCCATATCCCATGAAGTCGGTGCGCAGCTTGGAGAGAGTCCTGTGATGCAGATAATGCACAGGCAAACCATTGAAGATGGAGTGAAGAGTGGAAAGTAGTTACACTGGAAGACAGCAAAGAAGACGGAGCTACCTTTTTTGTTTCTATCAAAGGGTAGCTGTTTGACAGATTTAAAGCTACCACATCAAGCAAGACCCGTTTCCTTGGGATGGGGGGTTCTAGTGTTGGTGATGTGATTGGAGGGTGTCTTGCCTATAAGCTGCCCATCATAGCCTGAGACAGGGGTTTCACCTCATCTGTTCAGGTGGGATTATAGGACCGTAGATACCTTGTTCTCCCCAACCTCAGCTGGACCATGTCACGGCAAGGAGGAACCACATGGATACCTACAACCATGATCCAGCCATTTGCCAATCTACACCGAATCTGTTGGATTGTAGTAGTGGTAGGTTCTTGCTTAGAAGTGGCCCAGGGGCAACAGTATCCAGTTGTCACTACAAACTATGGCAAGTTGAGAGGCTTAAAAACATCACTGCCCAATGAGATTTTGGGACCTGTGGAACAGTACTTGGGTATTCCCTACGCTCTGCCGCCCACAGGCGAGAGGAGGTTTCAGCCTCCAGAGCCACCCATGTCTTGGCCGGGTATCCGAAATGCCACTCAGTTCGCCCCGGTGTGTCCCCAGTTTCTGGAAGACCGCTTTTTACTCAATGATATGTTACCTGTATGGTTCACTGCTAACTTGGATACAGTGGTAACCTACGTGCAGGACCAAAGCGAGGACTGTCTATACCTGAACATCTATGTGCCCACTGAGGATGGAGCCAACACTTACAATCAACGCGCTGATTTCACCAATAATGAGGGTGGCGAAGACAAAGACATCCACGACGAGAACGGTCTGAGGCCCGTCATGGTATACATTCACGGCGGATCTTACATGGAAGGCACAGGGAACATGATCGATGGCAGCATCCTGGCCAGCTATGGAAACGTCATCGTAGTTACCCTTAACTACAGACTGGGAGTGTTGGGATTTCTAAGCACAGGGGATCAGGCTGCCAAAGGGAATTATGGCCTGTTGGACCAGATTCAAGCGTTGCGGTGGATCAAAGACAACATCCAGGCCTTCAAAGGAGATCCAAAAAGGGTGACGATATTTGGATCAGGAGCTGGAGCATCATGTGTTAGCTTGCTGACCCTGTCCCATTATTCAGAGGATCTGTTTCAGAAAGCCATCATCCAAAGTGGCACGGCTCTATCCAGCTGGGCCGTCAATTACCAGCCGGCCAAGTACACGCGCATGCTTGCCGAAAAAGTAGGCTGCAACATGCTGGATACCATAGAACTGGTGGAATGCTTGCAAAATAAGAACTATAAGGAGCTGATCGAGCAATATATCACGCAGGCCAAATACCACATTGCATTCGGGCCTGTTATAGATGGTGATGTCATCCCAGATGACCCACAGATCCTCATGGAGCAGGGTGAGTTCCTGAACTATGACATAATGTTGGGTGTCAACCAGGGTGAAGGTTTCAAGTTCGTGGATGGGATTGTAGATAGCGAGGATGGCGTGTCGGCCAATGACTTCGACTTTGCAGTGTCGGATTTTGTGGACCACCTGTACGGTTATCCGGAGGGGAAGGATACACTCCGAGAGACTATCAAGTTCATGTACACTGATTGGGCTGATAAGGAGAATCCAGAGACCAGGCGCAAGACTTTGGTTGCATTATTTACAGATCACCAGTGGGTGGCGCCTGCCGTAGCTACAGCCGATCTTCATGCACAGTACGGATCGCCGACGTACTTCTACGCTTTCTATCACCATTGCCAGAGCGAGATGAAGCCGAGCTGGGCCGACTCGGCACATGGAGATGAGGTGCCTTACGTGTTTGGGATCCCTATGATTGGCCCGACTGATCTGTTCAATTGCAACTTCTCCAAGAATGACGTCATGCTCAGCGCAGTGGTGATGACGTACTGGACGAATTTTGCTAAGACAGGAGATCCAAATCAACCGGTACCGCAGGACACCAAGTtcatacacacaaaacccaaTCGGTTTGAAGAAGTAGCCTGGTCCAAGTACAACCCCAAAGATCAGCTGTACCTGCACATTGGCCTGAAGCCGAGAGTTCGAGACCACTACCGTGCCACCAAGGTGGCCTTCTGGCTTGAACTTGTGCCTCATCTTCACAACATCAATGAACTGTTTCAGTATGTCTCGACCACCACCAAGATCCCGCCGCAGGACACTACGCCCTTCCCTTATACCAAACGACTAGGTAAAACTTGGCCGTCCACAACACGCCATCCGGGAATACCTCCTTCAAATACCAAGCAAACCACAGACCAGCGTAAAGGCAATGATCTCGTTGAGGACTCTGCTGTGATGATCGAGACCAAGCGTGACTACTCGACAGAACTGAGTGTGACCATTGCAGTGGGTGCGTCACTGCTCTTCCTGAACATCCTGGCCTTTGCCGCACTCTACTACAAGAAAGACAAGCGACGCCACGAGTCTGGTCGTCGTGGTACCAGCCCACAACGCAATGCCAACTCAAATGCTAACGATGTCTCCCGAATGCAGAGTGACGAACTCGCATCATTGCAGAtgaagcagcagcaacaacaactgGAGCAACAACTTGAAAATGAGCACCGGCACGAATGTGAGGCACTGAGGCTCGCATGCCCACCTGATTACGCACTTACGCTCCGCCGGTCTCCTGACGATGTGCCGCTCATGACACCCAGCACCATCACCATGATTCCCAGCTCGCTTGGCACCATGCAGCCCTTGCACAATTTCAATGCATTCGTTGGGACTCAGAACAGCACCAACCTCCCCCACGCTCACTCCACCACCAGGGTATAG

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444228 lncRNA upstream 167875 12741736 ~ 12741947 (+) True G375120
TU444157 lncRNA upstream 278592 12629553 ~ 12631230 (+) True G375053
TU444156 lncRNA upstream 281479 12628106 ~ 12628343 (+) True G375052
TU444155 lncRNA upstream 283590 12624928 ~ 12626232 (+) True G375051
TU444073 lncRNA upstream 375523 12533805 ~ 12534299 (+) True G374985
TU444357 lncRNA downstream 46836 13035210 ~ 13035502 (+) True G375238
TU444368 lncRNA downstream 105848 13094222 ~ 13094421 (+) True G375249
XR_004577343.1 lncRNA downstream 121940 13110314 ~ 13115156 (+) True LOC117596171
TU444391 lncRNA downstream 332899 13321273 ~ 13322869 (+) True G375270
TU444590 lncRNA downstream 448273 13436647 ~ 13437057 (+) True G375422
XM_026931727.2 mRNA upstream 59625 12825950 ~ 12850197 (+) True pudp
XM_026932252.2 mRNA upstream 171159 12726500 ~ 12738663 (+) True sts
XM_026932253.2 mRNA upstream 171159 12726500 ~ 12738663 (+) False sts
XM_034299951.1 mRNA upstream 212507 12673993 ~ 12697315 (+) True anos1a
XM_026932122.2 mRNA downstream 245510 13233884 ~ 13270417 (+) True prkx
XM_026932116.2 mRNA downstream 300452 13288826 ~ 13302116 (+) True mxra5a
XM_026932117.2 mRNA downstream 300452 13288826 ~ 13302116 (+) False mxra5a
XM_026932368.2 mRNA downstream 365551 13353925 ~ 13394780 (+) True dhrsx
XM_026932366.2 mRNA downstream 373268 13361642 ~ 13394780 (+) False dhrsx
TU442901 other upstream 1900202 11006008 ~ 11009620 (+) True G373955
TU442162 other upstream 3033269 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 4755967 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 6190996 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 7702091 5207595 ~ 5207731 (+) True LOC113537771
XR_004577362.1 other downstream 1028149 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 1034876 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 2091366 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 2126098 15114472 ~ 15116856 (+) False smdt1b
trnaq-cug_18 other downstream 2360880 15349254 ~ 15349325 (+) True trnaq-cug_18

Expression Profile