Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU89148 |
| length | 3560 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 3 |
| gene id | G71283 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 19218317 ~ 19222919 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0019538 | protein metabolic process | biological_process |
| GO:0043603 | cellular amide metabolic process | biological_process |
| GO:0043604 | amide biosynthetic process | biological_process |
| GO:1901564 | organonitrogen compound metabolic process | biological_process |
| GO:1901566 | organonitrogen compound biosynthetic process | biological_process |
| GO:0009058 | biosynthetic process | biological_process |
| GO:0009059 | macromolecule biosynthetic process | biological_process |
| GO:0043043 | peptide biosynthetic process | biological_process |
| GO:1901576 | organic substance biosynthetic process | biological_process |
| GO:0006412 | translation | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0044237 | cellular metabolic process | biological_process |
| GO:0044238 | primary metabolic process | biological_process |
| GO:0044249 | cellular biosynthetic process | biological_process |
| GO:0044260 | cellular macromolecule metabolic process | biological_process |
| GO:0044267 | cellular protein metabolic process | biological_process |
| GO:0044271 | cellular nitrogen compound biosynthetic process | biological_process |
| GO:0071704 | organic substance metabolic process | biological_process |
| GO:0006518 | peptide metabolic process | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:0009987 | cellular process | biological_process |
| GO:0006807 | nitrogen compound metabolic process | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0034645 | cellular macromolecule biosynthetic process | biological_process |
| GO:0044391 | ribosomal subunit | cellular_component |
| GO:0022626 | cytosolic ribosome | cellular_component |
| GO:0022627 | cytosolic small ribosomal subunit | cellular_component |
| GO:0044445 | obsolete cytosolic part | cellular_component |
| GO:0015935 | small ribosomal subunit | cellular_component |
| GO:0019843 | rRNA binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ko03010 | Ribosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU89082 | lncRNA | upstream | 170145 | 19047958 ~ 19048172 (+) | True | G71237 |
| TU89012 | lncRNA | upstream | 316156 | 18901225 ~ 18902161 (+) | True | G71183 |
| TU88954 | lncRNA | upstream | 525684 | 18688548 ~ 18692633 (+) | True | G71136 |
| TU88779 | lncRNA | upstream | 740289 | 18477043 ~ 18478028 (+) | True | G71038 |
| TU88777 | lncRNA | upstream | 749982 | 18465219 ~ 18468335 (+) | True | G71036 |
| TU89246 | lncRNA | downstream | 701983 | 19924902 ~ 19925198 (+) | True | G71362 |
| TU89263 | lncRNA | downstream | 963695 | 20186614 ~ 20186966 (+) | True | G71378 |
| TU89305 | lncRNA | downstream | 1701649 | 20924568 ~ 20924837 (+) | True | G71414 |
| TU89315 | lncRNA | downstream | 2088671 | 21311590 ~ 21312022 (+) | True | G71424 |
| TU89346 | lncRNA | downstream | 2896664 | 22119583 ~ 22122533 (+) | True | G71452 |
| AMCG00014612 | mRNA | upstream | 1984 | 19214276 ~ 19216333 (+) | True | AMCG00014612 |
| AMCG00014613 | mRNA | upstream | 21478 | 19193419 ~ 19196839 (+) | True | AMCG00014613 |
| AMCG00014607 | mRNA | upstream | 27364 | 19184279 ~ 19190953 (+) | True | AMCG00014607 |
| AMCG00014599 | mRNA | upstream | 161854 | 19048293 ~ 19056463 (+) | True | AMCG00014599 |
| AMCG00014598 | mRNA | upstream | 170676 | 19045683 ~ 19047641 (+) | True | AMCG00014598 |
| AMCG00014610 | mRNA | downstream | 862 | 19223781 ~ 19236789 (+) | True | AMCG00014610 |
| AMCG00014608 | mRNA | downstream | 14651 | 19237570 ~ 19252607 (+) | True | AMCG00014608 |
| AMCG00014609 | mRNA | downstream | 62414 | 19285333 ~ 19291750 (+) | True | AMCG00014609 |
| AMCG00014606 | mRNA | downstream | 73497 | 19296416 ~ 19317255 (+) | True | AMCG00014606 |
| AMCG00014611 | mRNA | downstream | 96950 | 19319869 ~ 19330918 (+) | True | AMCG00014611 |
| TU88725 | other | upstream | 943957 | 18271854 ~ 18274360 (+) | True | G71004 |
| TU88601 | other | upstream | 1769864 | 17403511 ~ 17448453 (+) | False | AMCG00014553 |
| TU88385 | other | upstream | 2749204 | 16465681 ~ 16469113 (+) | False | AMCG00014525 |
| TU88218 | other | upstream | 3085515 | 16129525 ~ 16132802 (+) | False | AMCG00014508 |
| TU88058 | other | upstream | 3538529 | 15675631 ~ 15679788 (+) | False | AMCG00014490 |
| TU89430 | other | downstream | 3632423 | 22855342 ~ 22855646 (+) | True | G71525 |
| TU90165 | other | downstream | 8612584 | 27835503 ~ 27841871 (+) | True | AMCG00014704 |
| TU90175 | other | downstream | 8645784 | 27868703 ~ 27879800 (+) | True | AMCG00014703 |
| TU90214 | other | downstream | 9079454 | 28302373 ~ 28304073 (+) | True | G72175 |
| TU90740 | other | downstream | 10628531 | 29851450 ~ 29851821 (+) | True | G72605 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00002198 | False | 877 | lncRNA | 0.42 | 3 | NC_007112.7 | 34711081 ~ 34713710 (-) |
| striped catfish (Pangasianodon hypophthalmus) | TU444906 | False | 3777 | lncRNA | 0.42 | 3 | NC_047620.1 | 14036341 ~ 14042614 (+) |
