RNA id: AMCG00014599


Basic Information

Item Value
RNA id AMCG00014599
length 3338
RNA type mRNA
GC content 0.42
exon number 9
gene id AMCG00014599
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19048293 ~ 19056463 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGTGCGGGCAGTGACGGCGTCCGCACGGACACGCCGCCGCGCCGCATCGGCGCTTCTCGCAGGTCGCTGAACCGGGAAGCACTCGCTGCGGGACTAGCGCCGgtAAACCATGAAGCCGTGATTGTTGATCTTGTCCATGATAATTGTCTCCAGTATGAGGACTGTGTGGAGAAACGCCTAAGCAAGGCAGCAGATATCATAGGAAGCGAGCAAACTAAAGATGTATATCTCATGTTCAACCAGAACAACCCAACTACTGCCCACAGCTGCAAAAGCCTAATTCAAAATTTACTGAAAAAGTTTGACAGCCTTAAGGAAGTTACTCATATACTGAGCCAGCCATGTGTAGCTTCCTCCTTGTACTGCTTTAAACAAGCTATAGACAAAGCTAACCTCTGCACTGTGAAAATCATTACCTCTGCACAGGGAAAGACTGCATTGGAGGCCTACGTAGATCTGTTGTTCACAGCGGTCTACAGCTTTGAATATGAAGTGGTGTATGACAATTCACACTGTCCTGGCAGTGATCCCCCCACCACAAACAATACTGAGACCTTCCTCACTGGTGAGCAGCTGCAACATGCCAGAGAGGAAGTTAGCACTTTTCTCAGACAACTACCTGCTCTCAAAGGAGACATTACCATCCTGAGATCTCCTTTAATTTCAGgAGATCATTTTTTACATGGTTTCACCACAAGGACAGGTGGCATTTCCTATATAGAGACCCTCAGCTCCCTGAACCTCTTCAGCAGTTCGAAGCGCCGAGATCCCAAATCTGTTGTTGCTGAGAACATCCGCCGGCTGGCACTGGAGGCAGGATTTGATGAAACGAGGTTCCACCTGGTGAAGACCGATCACGCTAATGATGTGTGGGTCATAGGCAGAGAGGAGCCTGAGAGTTATGATGGCATAGTCACAAATCAGACAGGGGTGGTCATTGCagcccccggagcagactgcatTCCTCTGCTGTTCACTGACCCGGTCCGAAAGGCCATTGGTGTGGCCCATTCAGGATGGAGAGGTACCATAATGGGGATTGCCATGGCTACAGTCAACGCAATGGTTTCTGAGTATGGCAGTGCTGTTACGgacattgttgttattgttggcCCTTCAGTGGGACCATGTTGCTTTAAACTGTATGAAGAATCAGCCAAGGCTTTCCGTGCATTGCACCCTGACTGTGTCCAGAACAGGGGGTCATCCGCTTATGTTGACATAAGACTAGCCACAAgAGTTCTCCTTGAACGAGGGGGAGTCCTCCCTGACAACATCCAGGATGAGAGTGTATCTGAAGGACGGCAAAACCTTACCCTGTGCACATCTTGTCATCCTGACAAATTTTTCTCTCACGTCCGAGATGGAAACAACTTTGGCACACAGATGggatatttatcaattaaagaAGGACCTGATTGGGGTCACTGACATTGAATGGACTGCATGTGGGGAGAGATTATTCTGTACTTCTGAAGAGGTTTGCTCAAAGGAAGATGTGGAACCATCTTACACTCACGTGAAAAACGAGTTTGTCACGTGAGTGTAAGACCTACCAAGATAATGAACATGTTACAATGTGTAGGTTTGTCTAAGAATATGTATAGCAAAAGCAATGATGACTACAGGTTTTAGGTATTTCTGTAGGTCTGTATGTTCTATAAACAGGGAGATTGTTTATGGCGCTCACTCAGAAATCAAGAAGCTCAATTCTACATGTACCTCATTTGTCCTGCCTTTTATATTGTGAATACAAGTAGgggattcatttttttaattgcaaaggAAATTAACTGCACGCAATATAATACTGTGCCAGATTCCACTTAGAACTGATCAACTCTAATGATTATTCAGATAGGTAGGTAATTCCCCAAAACAAGTGCTTGTCCAGCATTGGatgaatacatataattaataataaataaagtagcaCATGAATTAtcttatgatttttgtttttatttaatcaaaaaacCTCTGTCAATAGGATAATCTGTTAGGAAACCCATTATTTATTATGCAGATAATGACAATACAATATACTATAGTAACATATTGTTATTGCTTGTCTGGTTGACAAGGTCCTCCTCACAATATAATTCACTAAATCCTAGCAAGGCTCAGCCCATTGTGTGACAGCGATAAATGACTGGTTATTTCCCATGTTACATGTATCATGACAAGGATCTATGATCATTACAAGTATATTATCTCCCCTCTCTAAATAACTTGTAGACATTTAATCTATGTGATATTTGCAGGCGTCAGGGCAACCACAATCCAGTCAGGATACTGTTGTAATTTTTGTGGGTATTAAATCCAGAATCCTAATAGAATCCATTAATGCAAGCTTTTTGTGCCTGGAGTATCTACCCACTGCAGTCCAGCAGAGGTCACTGTTgctgcatgtatgtgtgtgatacAACTTGCTTACTCGcttcaaataaatcatgttCAGGCACATATCCAAAATATACTTATCTGGATTGGGTTTATGTGCTTATCAGCAGTGCTGCAATATCACAAAGGCTAGCTGTGACATTTGGCAAAGCTAAGGAAGTAACATTTCATGGAGTAGTCGTAGgtaaacacaacacaagctTTATCTGCAATGCTAGGTGTAAAGTGCCCAGGTTACAGGGAATACAGTTGTGATGAATCTCATTGGAGAGACATTGCTGTATAGGCAGCTTCTCTGCTCTCTGGCAGATTGAAGACCATTGCAGCAGAACTGGGCTTGGTCCTGGCACAGACCGCAGGACAGTTCAGCGTTCAGTGCTGGTATTTCTAAGTGGACAAGCAATATTTCCCTCTGCTGCAGAGAGACTGACTTGTTTTCATAGTTAATgttatgtatttgaatttggacagatacaaattaatataaagtataatatagtTTGCATAATTTGCAGGCTAGTAGCAGAGGATTCTTCAATGGATAATTTACATGGATTCCTAATAGagaagaaatcaaatcaattaattttgtaAGAACAGAAAATACCCTCAACGAAAGGTGTTGAAAATGGTAAGGACAGAGTGACCTTTCTCGCACCATTAAATCACTAAGCCACTGCCTGTTTAGTCCTGTCTTTCAATGATGTGTTGTAGTGTGATGACTCTAATCTATTAAGTAAAGTAGTGAGGATAATATGCAGATGGCTTTAGTAGGTAGTTTGATTGAATCAGCCAGCTGGAATACTGAGTTCCACATGACTGAAAATTACCGTTTTGTGAATGTGATCATTATTGATGTAAGTTGTCTATTACACTGCACATTAATATACCACTATATGTAATTGTACTTGCATTAATATGTTGGTTTAATT

Function

GO: NA

KEGG:

id description
K05810 yfiH; polyphenol oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89082 lncRNA upstream 121 19047958 ~ 19048172 (+) True G71237
TU89012 lncRNA upstream 146132 18901225 ~ 18902161 (+) True G71183
TU88954 lncRNA upstream 355660 18688548 ~ 18692633 (+) True G71136
TU88779 lncRNA upstream 570265 18477043 ~ 18478028 (+) True G71038
TU88777 lncRNA upstream 579958 18465219 ~ 18468335 (+) True G71036
TU89148 lncRNA downstream 161854 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA downstream 161854 19218317 ~ 19222919 (+) False G71283
TU89157 lncRNA downstream 161854 19218317 ~ 19222919 (+) False G71283
TU89246 lncRNA downstream 868439 19924902 ~ 19925198 (+) True G71362
TU89263 lncRNA downstream 1130151 20186614 ~ 20186966 (+) True G71378
AMCG00014598 mRNA upstream 652 19045683 ~ 19047641 (+) True AMCG00014598
AMCG00014595 mRNA upstream 85250 18949313 ~ 18963043 (+) True AMCG00014595
AMCG00014594 mRNA upstream 148093 18889772 ~ 18900200 (+) True AMCG00014594
AMCG00014596 mRNA upstream 170020 18853308 ~ 18878273 (+) True AMCG00014596
AMCG00014591 mRNA upstream 202322 18803406 ~ 18845971 (+) True AMCG00014591
AMCG00014607 mRNA downstream 127816 19184279 ~ 19190953 (+) True AMCG00014607
AMCG00014613 mRNA downstream 136956 19193419 ~ 19196839 (+) True AMCG00014613
AMCG00014612 mRNA downstream 157813 19214276 ~ 19216333 (+) True AMCG00014612
AMCG00014610 mRNA downstream 167318 19223781 ~ 19236789 (+) True AMCG00014610
AMCG00014608 mRNA downstream 181107 19237570 ~ 19252607 (+) True AMCG00014608
TU88725 other upstream 773933 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1599840 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2579180 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 2915491 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 3368505 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 3798879 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 8779040 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 8812240 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9245910 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 10794987 29851450 ~ 29851821 (+) True G72605

Expression Profile