RNA id: XM_034300035.1


Basic Information

Item Value
RNA id XM_034300035.1
length 3216
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC113537595
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10842546 ~ 10848314 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGCCTTAGGGAACCCAGACCTCAATGAggcatgatttttaaaatacatatgcaaaaaaaaatacagtttactCATTAAACAGGGTAAATAAAGTCACGAAGAATGGGCGATAATGAAATGTTCATATCTATCTGGGGAAAAAACGGACATAAAACACCTAGATGGAAGCAAAATGTACGTCAAAGATGAATAATCTGGAAACAGAAGTAATCGGAGGAGAAAATGCTGGAATGTCCTGGCAGGAGCTCAGGTGCTTCAGAGACATCCTGGACGTTGTCCTCAATCTAAATGATGAGGAATGGAAGGCATTGACGAAGGATATGCCAAATGTGGGCACAAGAATGGAGTATGCAGGTCTTTGTACAAGAATCGTGATATCGGTTTTGAAATCTGCAATTGAAAGATACCTGACAATAGTGATTGAGGTCATGGGAATTGAATCGCTTCTCATTGCCCAAGAAAAGCTGaaggaaaagggggaaaatgtgTCAAAGGGTGCAGCTGCTACCCCAGACAGCAGATCTTCATCAGAGGAAAgATCAGTGGACCTGTCTGATTTCATCTGTGACAGTCTGGACAGTTTTGTCAACAGTGTGAAAATGGCAATGCAAGAGGCGATCTGGAAGACTGCCTCTGGAAAAACCTTGCTATTTGCTGAAAACTGGAAGACATGCAGTCACGTCACTAGAGAGATGTTACATATCCTGTTGGCCAAATTGAAACCGTCTCGCACAGAGGCACAGTTAAGGTCAGAGGCACAGGTAAGTTTAAACACTGAAGCTATTGCTGGGAAAGTTGTTTTGGTTGTGTTAGAAGACATGGAAGGCACCAGAGTGGGAAGACTTGATCTTAAACAAAGCAGGGATTTGCTAATTGCTGCTTCAGAGCAGATAAAACACCTGGCTTCGTTATCTAGCTCGGTGGAAAGTcttaataagaaagaaaaggcTCAACTGTCCCATCAACACTTCCAGACTGAAGCTCACAGGGCTGTAAGCCAAGTGCTTCTCATAAACACTGGAGTCTTGGAGATGGACACCAGTGACTCTGACTTGCCACACAGCCATACTTGTCAGGCAGAGCTCTCCGATGCCTTGCTCGTTCAAGTAGACTCAACATCTAGGGACATTGTAGAAACAGTTAAAAGTCACCTGGACATTTTGGCATCATCTGGTTACTCTGAGGCTAAAGGTGCTGGATTTATTTCAGTGATACACCACATGTTCCACACTGTACATGAGAAGGTGAAGATGTTTTTTAAAGTGTCCAGGAAACCTGTGAAAGAAAATGTCACAGAGAATTTTGATACGGTGCAACAAAAAAGTTCCACAGCTACATCCACAACTAGCAGTGAGACTTTGGTGGACAAACCTGACCGTGCTGCCAAGTCAGAGAAAAGAACATCAAGCCATCTTTCCCAGCTAGATTCAGAAGTTTCTCTGAGATCCCATCAGATAATACAAGGGGTCATGCAGGCACTGGAAAACCTTGTTAATCACAGCAGTAACTCTCAAATGAGTGAAGTAAGCAGAGCAAAGCAGGAGGAGGACAGGTACATCTCACGTCCTGGATCAGGGATTGCTACTGATGAAAGAGCATCTGGTGTTCCTTCAACTCACCAAACTGTAGATGTTTCCAGTAAGCAGTTTAATCACAAGACAGTCCAGACAGTGAGTGATATCCTCCTCAAACCAGGGAAAGAAGCCGTAGATCGGCTTGAGAGCGCAACTTTCGTCACGGTAGAGTCAGTAGCGTCCGACATTATGGAAGATTTTGTTAAAGATTTAGAGAAAATGTCCTCATCTAATCAAATGAACCATGGGCAAAACCAAAGTGTGACTGAACCAACACCTTCACAGCATTTTGCTGATCAAAGATTTTACAAAAGGATGGAGAAGAAGGTGTTTGGATTTCTCCTGAGGCTCCAAAAAACCCCACAGGTTTTCCAGGAGGAGACGAGTGCACAAAGAGCAGATCCTGAGAATCTGTCAGTTAGTACACCTTCTCCCCATCTGGTATCACCAAAACTCCAGGATAAATTTGACCAAACAGCAGGAGAGGAAACCGCTTCTAGTGAACATCCTGAACTGTGCAAGGTTGAATCAGAAAtgccaagcacatcacacattgGTGTTTCTACAAAAGCTTTACATTCAACTGATGTCACTGAATGTTCCTCCACTGTGCCAGAAATGAGCACTGACCAGGTCATGCAAATCTACATCAGTGAGAATGGCACCATCTTTGAGAAGCCTTATTCAGTTCCTGATCAGTTTCAAAGGTCAGGCTCTGACAGAGCCCGATTGGAGAACATGGCATCTGATGCTTATGGTCCTCCAAATTTAGCATCAAACATTAAGATGGATTTTGTAGCAGGACCGTCACACACTATAGGCAGTTCATGGGATTCAAAGCCAGTGGCACCATGTGGGAAGAAGCGGCAGCTGAACAATCCTGTTCTTTTACAAGCGTTAAAGATACTGGCAGAGGAGACAGTTAAGCACCTGTTTGTCCACTTCCACAGCCTTAAACCTTCAAAAGTGGCTGAACAACTGGCATCTTTAGCTTCCTCTTTCCAAAACAAGCCAGATTTCAACAAATTAACTGGCTTTCCTCATGATGTTCCTGAGGCAGTAAGCCAGTTCACTGAGACTCTTACAGACTCAGTGATAAAATCCTTAACTTCAACTGTGGAAGTGACATCAGAAGCAAAATTAACAAAAGCATTTGCTGAGAGGATCCCAGGTACCAAGTCTCCTGACTCCATGACCACACCTTCAAACAAGTCTTCCACTTCTCTGGTAGACGAGAATCTGGATAGTCTTTGGAGACAGGAGAGCCATTGCTGCCAAATCCCAAACAATGGCAGCATTTCTTTGGATCCAGCTCCTGAAGTGCAACGGAGAGCTTCCTGGATTCGTTTCATTGCTGGGAAGAAAGCTTATGAGATCAACAAAAAGAAACGTCCAATTGTCCCTATGTCTTCAAATATCAGTCGACCTTTTCTGGAAATCTTCAGGAGGATTCATGTAGAGAATCAAAATCTTCAGGACCAGCAGGCAAAGCAGTTTGTCACCGTCCATCCAGGACGTCCTCAAGAGTCTCCAAAGCCCTGAGACAGCCCTTCAGTCAACGAGGTTCAACCTAATTCAACGCAGCTGAAGACCTGAAAAATGTGCAGTGTTTCTCTTTAAATATGAATGGAAAATAAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442796 lncRNA upstream 31529 10809826 ~ 10811017 (+) True G373871
TU442795 lncRNA upstream 35102 10806240 ~ 10807444 (+) True G373870
TU442398 lncRNA upstream 179034 10645863 ~ 10663512 (+) True G373522
TU442414 lncRNA upstream 268051 10511081 ~ 10574495 (+) True G373538
TU442416 lncRNA upstream 311880 10528816 ~ 10530666 (+) True G373540
TU442861 lncRNA downstream 81430 10929744 ~ 10933803 (+) True LOC113537644
XR_004577352.1 lncRNA downstream 82415 10930729 ~ 10932319 (+) False LOC113537644
TU442877 lncRNA downstream 100617 10948931 ~ 10951480 (+) True G373934
TU442882 lncRNA downstream 113425 10961739 ~ 10965155 (+) True G373939
TU442930 lncRNA downstream 213702 11062016 ~ 11064035 (+) False LOC113537724
XM_026932030.2 mRNA upstream 184828 10582542 ~ 10657718 (+) True atp11a
XM_026932031.2 mRNA upstream 185453 10564386 ~ 10657093 (+) False atp11a
XM_026931673.2 mRNA upstream 420388 10412101 ~ 10422158 (+) True cdadc1
XM_026931670.2 mRNA upstream 432509 10400379 ~ 10410037 (+) False rcbtb1
XM_034299876.1 mRNA downstream 31681 10879995 ~ 10883187 (+) True LOC117596104
XM_034300281.1 mRNA downstream 34866 10883180 ~ 10886799 (+) True LOC117596166
XM_034299947.1 mRNA downstream 45722 10894036 ~ 10927851 (+) True pnpla6
XM_034299946.1 mRNA downstream 45722 10894036 ~ 10927851 (+) False pnpla6
XM_034299948.1 mRNA downstream 45722 10894036 ~ 10927851 (+) False pnpla6
TU442162 other upstream 965993 9839096 ~ 9876553 (+) True LOC117596102
TU441073 other upstream 2688691 8149960 ~ 8153855 (+) True G372351
XR_003403794.1 other upstream 4123720 6718694 ~ 6718826 (+) True LOC113537770
XR_003403795.1 other upstream 5634815 5207595 ~ 5207731 (+) True LOC113537771
XR_003403603.2 other upstream 5928699 4664294 ~ 4913847 (+) False dmd
TU442901 other downstream 157694 11006008 ~ 11009620 (+) True G373955
XR_004577362.1 other downstream 3168209 14016523 ~ 14021131 (+) False gpalpp1
TU444908 other downstream 3174936 14023250 ~ 14042614 (+) False G375711
TU445701 other downstream 4231426 15079740 ~ 15091481 (+) False rfx1b
TU445724 other downstream 4266158 15114472 ~ 15116856 (+) False smdt1b

Expression Profile