XLOC_000122 (pdia2)


Basic Information

Item Value
gene id XLOC_000122
gene name pdia2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9954489 ~ 9966195 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000221
CTTTTACAGCTCACTTCAGCAACATCCTCCTCAACTGATCCACCATGAGGTTTCTACACATCCTGGCTCTCGGCCTCCTCGTCTGCGGCCTGTGTGCGAGAGCTGATGAGGAAAACACAGAGGAGAAATCTGAGGAGAAAGTTGAGGACAACTCTGAAGAAGACACAGAGCCAGAGAAGCCAGAAAAGACAGACGAAATTACAGAAGACAAAGACGTTTTAATTCTTCACAGCGTCAACTTTGACAGAGCTCTCAGTGAGAACAAATACCTGCTGGTGGAGTTTTATGCTCCATGGTGTGGACACTGTCGCAGTCTGGAGCCCATTTATGCTGAAGTGGCTGGACAGCTGAAAAATGCATCATCTGAAGTACGACTGGCCAAAGTAGACGCGATAGAAGAGAAAGAGCTTGCCTCAGAGTTCAGTGTGGACAGTTTTCCCACTCTCAAATTCTTCAAAGAAGGAAACAGACAAAATGCCACTACTTTCTTTGGAAAGCGAACTCTGAAAGGGATCAAAAGGTGGCTGGAGAAGCACACAGCGCCCAGCGCTACTGTCCTCAATGATGTGAAGAGCGCAGAGGCTCTGCTGGAGGCCAATGAAGTGCTTGTGGTCGGATTCTTCAAGGATTTGGAAGGAGAAAAGGCGAAGACATTCTATGATGTAACTTTAATTGCAGTGGACGTTAACTTTGGCATCACAAGCGACCCAGAGCTCTTCAAGAAGTATGAAGTGAAGACTGATTCGCTGGTGCTCTTCAAAAAGTTTGACGAAAGGCGGGCAGACATGCCACTCTCTGATGAAACCAAGCTGGACAAAGGAGAGAtgatttcattcatccattccaACAGTATGAGACTGGTCGTTCCATTCAACGAGGAGAATGCCGAACAAATTTTCAACTCCAAGGTCCGTAAGCATTTGCTTCTATTTCTTAATACAACAGTGGATTCCCAGAATGCATTAGTAGAGGAGTTTAGAGAGGTTGCCAGTGAGTTTAAGGAGAAGGTGATCTTCATCACAGTAGACGTTACGGCCGAAAAAGTAAATCACGTGCTGAAGTATTTCAGTATCTCGGAAGACGATGTTCCAACTATTCGTCTGATCAACACTGAGGATGTGGTCACATATGCAATGGATGGATCAACTATCAACAAAGACACACTGAGAACGTTTTGCCAGGGTGTTTTTGATGGTACCGTGAAGCCCTATTTAAAGAGTCAAGAAATTCCAGAGGACTGGGACAAGAATCCGGTTAAAGTCCTTGTGGGGAAGAACTTCAATGAAGTGGCTTTTGATGAGTCTAAGAACGTCTTTGTGGAATTTTATGCTCCATGGTGTGGTCACTGTCAACAACTTGCTCCTGTGTGGGATGAGCTAGGCGAGAAGTACAAAGACCAAGAGAATATAATCATTGCCAAAATGGACGCCACAGAAAATGATGTGGAAGATCTGACAATACAGGGATTTCCCACAATTAAATACTTTCCTGCTGGGACCGAAAAAAAGattgTTGACTATGATGGAAATAGAGATTTGGAGACTTTCTCAAAGTTCCTGGATAATGGAGGAGTTTTACCAAAAGAAGAGAGTAaagaagatgaagatgatgatgatgacgacaatgatgatgatgatgaagataagCCAACAGACGAATCAAAAGAAGAGTCACCAAAAGCCACCAATGAAACCGACAAGGATGAGCTGTAAAAACAAGGCTTAAATCAAGCGATCAATGTGATGTTTTTATGCAACATGAGCAAGATTGATGTCATTTTCTCTGCACTAGACAATTTGTATAAACTACAAACctgacaaaatataataaaaaaacacaagttTA
>TCONS_00000222
ATGAGGTTTCTACACATCCTGGCTCTCGGCCTCCTCGTCTGCGGCCTGTGTGCGAGAGCTGATGAGGAAAACACAGAGGAGAAATCTGAGGAGAAAGTTGAGGACAACTCTGAAGAAGACACAGAGCCAGAGAAGCCAGAAAAGACAGACGAAATTACAGAAGACAAAGACGTTTTAATTCTTCACAGCGTCAACTTTGACAGAGCTCTCAGTGAGAACAAATACCTGCTGGTGGAGTTTTATGCTCCATGGTGTGGACACTGTCGCAGTCTGGAGCCCATTTATGCTGAAGTGGCTGGACAGCTGAAAAATGCATCATCTGAAGTACGACTGGCCAAAGTAGACGCGATAGAAGAGAAAGAGCTTGCCTCAGAGTTCAGTGTGGACAGTTTTCCCACTCTCAAATTCTTCAAAGAAGGAAACAGACAAAATGCCACTACTTTCTTTGGAAAGCGAACTCTGAAAGGGATCAAAAGGTGGCTGGAGAAGCACACAGCGCCCAGCGCTACTGTCCTCAATGATGTGAAGAGCGCAGAGGCTCTGCTGGAGGCCAATGAAGTGCTTGTGGTCGGATTCTTCAAGGATTTGGAAGGAGAAAAGGCGAAGACATTCTATGATGTAACTTTAATTGCAGTGGACGTTAACTTTGGCATCACAAGCGACCCAGAGCTCTTCAAGAAGTATGAAGTGAAGACTGATTCGCTGGTGCTCTTCAAAAAGTTTGACGAAAGGCGGGCAGACATGCCACTCTCTGATGAAACCAAGCTGGACAAAGGAGAGAtgatttcattcatccattccaACAGTATGAGACTGGTCGTTCCATTCAACGAGGAGAATGCCGAACAAATTTTCAACTCCAAGGTCCGTAAGCATTTGCTTCTATTTCTTAATACAACAGTGGATTCCCAGAATGCATTAGTAGAGGAGTTTAGAGAGGTTGCCAGTGAGTTTAAGGAGAAGGTGATCTTCATCACAGTAGACGTTACGGCCGAAAAAGTAAATCACGTGCTGAAGTATTTCAGTATCTCGGAAGACGATGTTCCAACTATTCGTCTGATCAACACTGAGGATGTGGTCACATATGCAATGGATGGATCAACTATCAACAAAGACACACTGAGAACGTTTTGCCAGGGTGTTTTTGATGGTACCGTGAAGCCCTATTTAAAGAGTCAAGAAATTCCAGAGGACTGGGACAAGAATCCGGTTAAAGTCCTTGTGGGGAAGAACTTCAATGAAGTGGCTTTTGATGAGTCTAAGAACGTCTTTGTGGAATTTTATGCTCCATGGTGTGGTCACTGTCAACAACTTGCTCCTGTGTGGGATGAGCTAGGCGAGAAGTACAAAGACCAAGAGAATATAATCATTGCCAAAATGGACGCCACAGAAAATGATGTGGAAGATCTGACAATACAGGGATTTCCCACAATTAAATACTTTCCTGCTGGGACCGAAAAAAAGattgTTGACTATGATGGAAATAGAGATTTGGAGACTTTCTCAAAGTTCCTGGATAATGGAGGAGTTTTACCAAAAGAAGAGAGTAaagaagatgaagatgatgatgatgacgacaatgatgatgatgatgaagataagGTCAGTCAAAAGCCAACCGGTCAAAAGCCAGTTATTCACTTGATTATTTAGCCTCTTATTAGTAATTAACtacttattaatatttattgagtTGATTAAATCagcttttgtgtttctttctaaTTTTTTAGCCAACAGACGAATCAAAAGAAGAGTCACCAAAAGCCACCAATGAAACCGACAAGGATGAGCTGTAAAAACAAGGCTTAAATCAAGCGATCAATGTGATGTTTTTATGCAACATGAGCAAGATTGATGTCATTTTCTCTGCACTAGACAATTTGTATAAACTACAAACctgacaaaatataataaaaaaacacaagttTATTTATATCTCTGGTGCATTGCTTTAATGACATGTTAAACATTAGTGATGACTAATTTGATTGATAAAGTATAAACAGCTCAATCATTTTGAGCtattttgcaaataatattttcaatTATGCACACATTCGCTCTTATTTGTATGTCTAACAGGAAGATTTTTAAATGTCCTCATATTCAGTTGGGAATTGCATTTATCACATAGCTTATGCcatattttagttgtttttgattactggatattattattgttatctttgtaatttataaaatgttttctgtttCACTGAAGTCATGATTAAGTCAAAACTGACACTATTTTGTTAGACCACATTGCTTTTCTTGAGGTGAACAATTATTCTGTGGAAGTTAATCCAAAAAAATGAATGTTTGTCTTGTTATTCTTAAATTAAAGTCCAGTATTTTGGCTTTATAAAATGATGACTGAATcacaaaaaaatgataaaattagtCTAGATTGAAGTCTAAATGATTAGTACTTGATTTGTATGTTGTTTCCCTACATCAAGGGTCACCGACcttgaaactgagagctactttttGGGTAAAattaatgtgaagggctaccagtttgatacacacttcacaaataacaaatttgcttaatttacttttaattatatgttattgttaATCATCTGGTACATTGGACATttatactctgattttaatatgattaagacaatactctgattaagagtctaccatgtaaacaacgttttttgattaccttaaaggccAACAGACACTTGCGTCATGAAATACAaagattttttcttttcatttggcgTGCGCTGTCAAATTCCATTAAagcaacactcttccaccagtccttatataatttttaaactgcagttcaactcgaaattacatgaaactctggaagaTATGCTGGATAGCCTGATGatgtgacattaattgttttatactgaaactagGGATATAGGGAAGCGGGCAAtgtgttggtgacccctgctctacatcatggtgacacatttaaaatttaaaaatcaaaaaggtacatacacataaaacaaatctcacttttattgcagtttttttcAATCTGCAGTATTATCATGACAGAATGTAAGTTGTTTAAGGAAGTATAAAAAGGAAaaatgtgaaatagcctactcAAATGTAATTTTCATCCAGTTTTGTCGCTATAAAATTAACCTGAACAAGCAACTTTTAAAATTTTACCCATTGAGTGTTTGccagtgttttaatgcatttgaTGATgccagagtttttatttttacagtaactGAAGATGATGATCAGTTCATTCATTAATCTCCTTTAGCCGCACATTTATAATACAACATACCAATTTAAGTTTCTTCTCACAACCAACAAAGCCACAGCATACACTCTTTTCCATGATAGTAAATAAAGTAACGACG

Function

symbol description
pdia2 Predicted to enable protein disulfide isomerase activity. Predicted to be involved in protein folding and response to endoplasmic reticulum stress. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Is expressed in pancreas and pancreatic bud. Orthologous to human PDIA2 (protein disulfide isomerase family A member 2).

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0034976 response to endoplasmic reticulum stress biological_process
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016853 isomerase activity molecular_function
GO:0003756 protein disulfide isomerase activity molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-705 Predicted to enable protein disulfide isomerase activity. Predicted to be involved in protein folding and response to endoplasmic reticulum stress. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Is expressed in pancreas and pancreatic bud. Orthologous to human PDIA2 (protein disulfide isomerase family A member 2).

Ensembl:

ensembl_id ENSDARG00000018263

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000221 False 1845 mRNA 0.43 11 9954489 9964765
TCONS_00000222 True 3362 mRNA 0.37 10 9954533 9966195

Neighbor

gene id symbol gene type direction distance location
XLOC_000121 NA coding upstream 2616 9946664 ~ 9951873 (+)
XLOC_000120 NA coding upstream 39859 9886955 ~ 9914630 (+)
XLOC_000119 pmm2 coding upstream 87633 9860381 ~ 9866856 (+)
XLOC_000118 elfn1b coding upstream 242187 9557212 ~ 9712302 (+)
XLOC_000117 uncx4.1 coding upstream 660374 9290103 ~ 9294115 (+)
XLOC_000123 si:dkeyp-75b4.8 coding downstream 189 9966384 ~ 9982114 (+)
XLOC_000124 si:dkeyp-75b4.10 coding downstream 28616 9994811 ~ 10000376 (+)
XLOC_000125 trim2b coding downstream 36998 10003193 ~ 10033113 (+)
XLOC_000126 fgb coding downstream 85568 10051763 ~ 10059496 (+)
XLOC_000127 si:ch73-132f6.5 coding downstream 108148 10074343 ~ 10124192 (+)
XLOC_000116 BX323038.1 non-coding upstream 669138 9277846 ~ 9285351 (+)
XLOC_000111 NA non-coding upstream 821999 9129386 ~ 9132490 (+)
XLOC_000106 NA non-coding upstream 978067 8967479 ~ 8976422 (+)
XLOC_000133 AL935188.1 non-coding downstream 397525 10363720 ~ 10363851 (+)
XLOC_000135 NA non-coding downstream 495849 10462044 ~ 10462882 (+)
XLOC_000136 NA non-coding downstream 651329 10617524 ~ 10617930 (+)
XLOC_000137 NA non-coding downstream 679069 10645264 ~ 10668028 (+)
XLOC_000138 NA non-coding downstream 679169 10645364 ~ 10680841 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_01275725_01282289 NA coding CI01000300 null 1275365 ~ 1282428 (+)