XLOC_000125 (trim2b)


Basic Information

Item Value
gene id XLOC_000125
gene name trim2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10003193 ~ 10033113 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000226
AATGATCACAAGTGTAAACCACAGACTGTAAAAAAAGGtgaaaacatgtatttttttggTATGACAGGAGGCAGAAAAACAATCAAGGTTGAGGGAGAGCGCAGAGATTATTTGCTTTTTTAGTCAGTGAGGCTGCACATTCTGTCCCGTGATTGGCTACTGAGCAACACTCAGCGTTCGGCTCCGCCCCTACGGCATGCTGGTGTGAGTCGCTTATGTCGCTGTAGTGCAGAAAGAGAAGAGCCTGTGCGAAAACAGCCCTCCACCCCTCCTCTCCGGGAAACGGGTCTCAGGCTGATGAGTAAGGCGAGGAGAGCCCGTATAGCTGCTGCATCTGAAGCTACAGAGCAATGGAGGGAAGGGTCCAGTGTCAAATGAGGGGACGCTGTGATTCCCCCCTGCAACCTGTGCTTGTTTTGGGTCTCCAGTGCATCAAATACACTCTCTTACCTTAATAATTTGGTATTACATAAAAAAAGTATACGCAGACTTTCATGCACATCGCCTGAACTTCATCTCTTAGGGTCTGTGCTTTCTGCATCCTTGTATTGTGGGTGCTGTTCCTCCGTCCACCCGCATGGAGGCGCCGCAGGCTTCTCCTGACAGCAGCAGTGAGGAGTGTACTGTACTAGAGGCTCTGCCTGGCAAGGGAACTGCGCTCATTTGCTCTCAACACAAAGGAAAAGTGTCTGCGCTGTACTGTTTGGTGTGTGAGAATGCAGTGTGTGAAGACTGTATGAACGGAGAACACGCTGAGCATCCCACAGATTCTCTGGAGAAAGCTGTGGATCAACAACTAGCGGCACTGCAGGACAAAGTGGATTCAGCCAAGAACAGGCTCCCTCAGATCAGAGAAGCGGTTCAGTATCTGAGAGAGATCCTGCAGCAGTTGAACTCTCAGCGCAGCTCCATTGAGGAGGACATTCACTCGTCCTTCAGCGAACTGCACAAAACCCTCGACACCAGGAAGAGCGTCCTGCTGATGGAGCTGGAGGTCACGTACGGACTCAAGCAAAAAGTCCTGCAGGCTCAGTTAGACACTCTCCTCCAGGAAGAATCTGCCATCAACTACAACTGCAGCCTGACCAGCGAAGCTCTGGACGGAGGAAGCAAAGCCTCTGTCCTGCAGGCCCATAAAGAGGCGGGAGAGCGACTCGGTGACCTGTCCAGCCAGGGCCTTCCTCTCCAGCCTGAAGAGAACGACCAGCTCGACCTCATGATGGAGATCGAAGGCCTGCGCAAGTCCATCCACAACCTGGGCACCATCGTCACCACCAATGCCGTGGCCAGCCAAACTGAGGCGTCCGGAGACGGTCTGGAGCAATGCATCGTGGGTCAGCCGGCATCCGTCATCATAACCACGAGAGATAAAGCTGGAGGACTGTGCAAGACTGGAAACGCCATTATCTCGGCTGAAGTTTACACACCGGACGGAAGCATCGCAGACGGAGAAATTGTAGATATGAAAAATGGAACGTATGAATTTCAATACACGGTGAAGAAAGAAGGCAACTTCAGTCTGGCGCTGAGACTTTATGATCAGCATATTAAAGGAAGCCCATTTCAGCTAAAGGTGAGCAGTTCTCCAGATGATTCTCCGACGACCACCACCGCAGCCAACGCCGCGTCCACCGGCTCCAGCGATGGAGGAGCGAGAAAAAGGAGCGCCAAATCTCCAGGGAGCCGCAGCCGGCAGAAGGGCGTCAGACGAGGAGGAAGCTTGTTCAGCACACCCAAAAAAAGGGTGAACCCCATCGAGGACGACCTGATTTTTAGAATAGGAACAAAAGGGAGGAATAAAGGAGAGTTCACTAACCTTCAAGGAGTCGCAGCTTGTTCAGAGGGAAGAATCTTAATCGCAGACAGTAACAATCAGTGTGTGCAGATATTTTCCAACACGGGTGAGTTTCAGAGCCGGTTCGGGGTGCGTGGTCGTTCACCGGGTCAACTACAGCGGCCCACTGGAGTAGCTGTACATCCCAACGGGGACATCATTATCGCTGACTATGACAATAAGTGGGTTAGCATCTTCTCCAGCGAAGGCAAATACAAGGCTAAGCTGGGCTCAGGACGGCTGATGGGGCCGAAGGGGGTTTCTGTGGACCAGAATGGTCATGTTATTGTTGTGGACAACAAGGCCTGTACGGTTTTCATCTTCCAGCCCAGCGGGAAACTCATCACTAAGTTTGGCAGCAGGGGCAACGGAGACAGACAATTTGCAGGCCCACACTTTGCTGCAGTGAACAACAATAATGAAATCATCATCACAGACTTTCATAACCACTCTGTTAAGGTATTTAATGCAGATGGGGAATTCTTGCTTAAGTTTGGCTCAAATGGTGAAGGAAACGGCCAGTTTAATGCTCCCACTGGCGTTGCTGTGGATGTCAATGGGAACATCATTGTGGCCGACTGGGGAAACAGTCGCATACAGGTGTTTGACGGGAGCGGGTCATTCCTGTCCTACATCAACACGGCAGCGGACCCTCTGTATGGGCCACAGGGTCTGGCTTTAACCTCAGACGGTCATGTAGTGGTGGCTGATTCTGGAAACCACTGCTTCAAAGTCTACCGTTACCTGCAATGA
>TCONS_00000227
CTGTTTCAGGTCTGTGCTTTCTGCATCCTTGTATTGTGGGTGCTGTTCCTCCGTCCACCCGCATGGAGGCGCCGCAGGCTTCTCCTGACAGCAGCAGTGAGGAGTGTACTGTACTAGAGGCTCTGCCTGGCAAGGGAACTGCGCTCATTTGCTCTCAACACAAAGGAAAAGTGTCTGCGCTGTACTGTTTGGTGTGTGAGAATGCAGTGTGTGAAGACTGTATGAACGGAGAACACGCTGAGCATCCCACAGATTCTCTGGAGAAAGCTGTGGATCAACAACTAGCGGCACTGCAGGACAAAGTGGATTCAGCCAAGAACAGGCTCCCTCAGATCAGAGAAGCGGTTCAGTATCTGAGAGAGATCCTGCAGCAGTTGAACTCTCAGCGCAGCTCCATTGAGGAGGACATTCACTCGTCCTTCAGCGAACTGCACAAAACCCTCGACACCAGGAAGAGCGTCCTGCTGATGGAGCTGGAGGTCACGTACGGACTCAAGCAAAAAGTCCTGCAGGCTCAGTTAGACACTCTCCTCCAGGAAGAATCTGCCATCAACTACAACTGCAGCCTGACCAGCGAAGCTCTGGACGGAGGAAGCAAAGCCTCTGTCCTGCAGGCCCATAAAGAGGCGGGAGAGCGACTCGGTGACCTGTCCAGCCAGGGCCTTCCTCTCCAGCCTGAAGAGAACGACCAGCTCGACCTCATGATGGAGATCGAAGGCCTGCGCAAGTCCATCCACAACCTGGGCACCATCGTCACCACCAATGCCGTGGCCAGCCAAACTGAGGCGTCCGGAGACGGTCTGGAGCAATGCATCGTGGGTCAGCCGGCATCCGTCATCATAACCACGAGAGATAAAGCTGGAGGACTGTGCAAGACTGGAAACGCCATTATCTCGGCTGAAGTTTACACACCGGACGGAAGCATCGCAGACGGAGAAATTGTAGATATGAAAAATGGAACGTATGAATTTCAATACACGGTGAAGAAAGAAGGCAACTTCAGTCTGGCGCTGAGACTTTATGATCAGCATATTAAAGGAAGCCCATTTCAGCTAAAGGTGAGCAGTTCTCCAGATGATTCTCCGACGACCACCACCGCAGCCAACGCCGCGTCCACCGGCTCCAGCGATGGAGGAGCGAGAAAAAGGAGCGCCAAATCTCCAGGGAGCCGCAGCCGGCAGAAGGGCGTCAGACGAGGAGGAAGCTTGTTCAGCACACCCAAAAAAAGGGTGAACCCCATCGAGGACGACCTGATTTTTAGAATAGGAACAAAAGGGAGGAATAAAGGAGAGTTCACTAACCTTCAAGGAGTCGCAGCTTGTTCAGAGGGAAGAATCTTAATCGCAGACAGTAACAATCAGTGTGTGCAGATATTTTCCAACACGGGTGAGTTTCAGAGCCGGTTCGGGGTGCGTGGTCGTTCACCGGGTCAACTACAGCGGCCCACTGGAGTAGCTGTACATCCCAACGGGGACATCATTATCGCTGACTATGACAATAAGTGGGTTAGCATCTTCTCCAGCGAAGGCAAATACAAGGCTAAGCTGGGCTCAGGACGGCTGATGGGGCCGAAGGGGGTTTCTGTGGACCAGAATGGTCATGTTATTGTTGTGGACAACAAGGCCTGTACGGTTTTCATCTTCCAGCCCAGCGGGAAACTCATCACTAAGTTTGGCAGCAGGGGCAACGGAGACAGACAATTTGCAGGCCCACACTTTGCTGCAGTGAACAACAATAATGAAATCATCATCACAGACTTTCATAACCACTCTGTTAAGGTATTTAATGCAGATGGGGAATTCTTGCTTAAGTTTGGCTCAAATGGTGAAGGAAACGGCCAGTTTAATGCTCCCACTGGCGTTGCTGTGGATGTCAATGGGAACATCATTGTGGCCGACTGGGGAAACAGTCGCATACAGGTGTTTGACGGGAGCGGGTCATTCCTGTCCTACATCAACACGGCAGCGGACCCTCTGTATGGGCCACAGGGTCTGGCTTTAACCTCAGACGGTCATGTAGTGGTGGCTGATTCTGGAAACCACTGCTTCAAAGTCTACCGTTACCTGCAATGACTACAGAGATAAGCAGAACCGTGCCGTACCTGTCCAAATCTCGCACTTAATCTCATTTAATGATGTTCGCCCTCCTTTTGTACCTGTTACCACTGTCCGATAACTCTCTGAGAAGACTAAAGCTTGATTATGGGATGCCCTTGGATTGCCTTTGCCAAAGCTCCACATAGATACACTGTGGAAACACGGAGACGTCTGAATGAAGCTGAAATCTCTGCTCCTCTGTGCTGCATGTGGAGTCGTGCATGCGCCGTCCCCTACAGTCTCTGCTCTGTACAACACTGTCATCATCAACTATTGGGTGAGGATGTGTTTTAGAGACGCTCGTAACTAATGCAGCCAAGAGAGCAGATGGATATTTCTCACTGTCTACAAGCTTTAGCATTCCCTTTACCTCCGTTTGGCTCCCTCGTTCATGGATGTTATGGTTGACTAATATACTAAAAATTTGGAATAATTAtgattttgaaatttatttcatcaTAAAGTTTTCTGCTTAGGTATTATCTCAATGTCAGGTATTCTTGCCATTTGAAGCAGAAttttcatcatcaccatcattacTGCAGTCGTCAATGTCACAAGACCCTTCAGAAATCAGTTCAGTGCTgaaatattacatattattatttttactttgaaaattaaacaatttattatataatattattatatttttatgaaacATTAAGAGTTtggtatttagattttttgggggattttattttattatgttttacatttgttcatgagtaattcatttacattttacatgtttGTGATTTAATGATTTCATTTATATGTT
>TCONS_00000228
GTTACTTAATATATCGATACGTATAATGTtgagaaattaaataaacatttatttagtgATTAGCAGGTTTAATAGAAATAATCATGAAATATAATATGATCTATGACTGTTTTATGATTGCTGATATATAATGAAGAATTGGAACAAGAAACAGTAAAAACATATATATGAAATACTAATGCATTTActagaaataaaaattataattaggaattgtaaaataatcatttattattattattattattattattaataataatgataattgcaataataataacaataataatcggcggttcattctgctgtggcgacccctgataaatgaagggactaacctgaaggaaaatgaatgaacaagtgaacaatattgataatatatgcttaatataatatattttaataaaactactgATAATATATTATCAGTCAATATCGGTCAGACATCCGAGAAGATGAGACATCCCAAATGAGTTTGGTTACAACTTTGATTTAATTTGCTTACAAAGGTTattttaaatgcaagtaaagtgtctttttgaaaaataaattctttgaaatttgattaaaatttaGTAGAAACTTCAACAAGAAatctaaaaaacacaaatattattcCATTGACCTGTTTTAGTACATTTTAGAGTGGTTTTAAAAGTCTGCATTACTTCATGTGTTGTATTCAGGTGTCTGCGCTGTACTGTTTGGTGTGTGAGAATGCAGTGTGTGAAGACTGTATGAACGGAGAACACGCTGAGCATCCCACAGATTCTCTGGAGAAAGCTGTGGATCAACAACTAGCGGCACTGCAGGACAAAGTGGATTCAGCCAAGAACAGGCTCCCTCAGATCAGAGAAGCGGTTCAGTATCTGAGAGAGATCCTGCAGCAGTTGAACTCTCAGCGCAGCTCCATTGAGGAGGACATTCACTCGTCCTTCAGCGAACTGCACAAAACCCTCGACACCAGGAAGAGCGTCCTGCTGATGGAGCTGGAGGTCACGTACGGACTCAAGCAAAAAGTCCTGCAGGCTCAGTTAGACACTCTCCTCCAGGAAGAATCTGCCATCAACTACAACTGCAGCCTGACCAGCGAAGCTCTGGACGGAGGAAGCAAAGCCTCTGTCCTGCAGGCCCATAAAGAGGCGGGAGAGCGACTCGGTGACCTGTCCAGCCAGGGCCTTCCTCTCCAGCCTGAAGAGAACGACCAGCTCGACCTCATGATGGAGATCGAAGGCCTGCGCAAGTCCATCCACAACCTGGGCACCATCGTCACCACCAATGCCGTGGCCAGCCAAACTGAGGCGTCCGGAGACGGTCTGGAGCAATGCATCGTGGGTCAGCCGGCATCCGTCATCATAACCACGAGAGATAAAGCTGGAGGACTGTGCAAGACTGGAAACGCCATTATCTCGGCTGAAGTTTACACACCGGACGGAAGCATCGCAGACGGAGAAATTGTAGATATGAAAAATGGAACGTATGAATTTCAATACACGGTGAAGAAAGAAGGCAACTTCAGTCTGGCGCTGAGACTTTATGATCAGCATATTAAAGGAAGCCCATTTCAGCTAAAGGTGAGCAGTTCTCCAGATGATTCTCCGACGACCACCACCGCAGCCAACGCCGCGTCCACCGGCTCCAGCGATGGAGGAGCGAGAAAAAGGAGCGCCAAATCTCCAGGGAGCCGCAGCCGGCAGAAGGGCGTCAGACGAGGAGGAAGCTTGTTCAGCACACCCAAAAAAAGGGTGAACCCCATCGAGGACGACCTGATTTTTAGAATAGGAACAAAAGGGAGGAATAAAGGAGAGTTCACTAACCTTCAAGGAGTCGCAGCTTGTTCAGAGGGAAGAATCTTAATCGCAGACAGTAACAATCAGTGTGTGCAGATATTTTCCAACACGGGTGAGTTTCAGAGCCGGTTCGGGGTGCGTGGTCGTTCACCGGGTCAACTACAGCGGCCCACTGGAGTAGCTGTACATCCCAACGGGGACATCATTATCGCTGACTATGACAATAAGTGGGTTAGCATCTTCTCCAGCGAAGGCAAATACAAGGCTAAGCTGGGCTCAGGACGGCTGATGGGGCCGAAGGGGGTTTCTGTGGACCAGAATGGTCATGTTATTGTTGTGGACAACAAGGCCTGTACGGTTTTCATCTTCCAGCCCAGCGGGAAACTCATCACTAAGTTTGGCAGCAGGGGCAACGGAGACAGACAATTTGCAGGCCCACACTTTGCTGCAGTGAACAACAATAATGAAATCATCATCACAGACTTTCATAACCACTCTGTTAAGGTATTTAATGCAGATGGGGAATTCTTGCTTAAGTTTGGCTCAAATGGTGAAGGAAACGGCCAGTTTAATGCTCCCACTGGCGTTGCTGTGGATGTCAATGGGAACATCATTGTGGCCGACTGGGGAAACAGTCGCATACAGGTGTTTGACGGGAGCGGGTCATTCCTGTCCTACATCAACACGGCAGCGGACCCTCTGTATGGGCCACAGGGTCTGGCTTTAACCTCAGACGGTCATGTAGTGGTGGCTGATTCTGGAAACCACTGCTTCAAAGTCTACCGTTACCTGCAATGA

Function

symbol description
trim2b Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2R. Orthologous to human TRIM2 (tripartite motif containing 2).

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-70 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2R. Orthologous to human TRIM2 (tripartite motif containing 2).

Ensembl:

ensembl_id ENSDARG00000076174

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000226 False 2587 mRNA 0.51 12 10003193 10032308
TCONS_00000227 False 2877 mRNA 0.48 10 10018466 10033113
TCONS_00000228 True 2591 mRNA 0.45 9 10019653 10032308

Neighbor

gene id symbol gene type direction distance location
XLOC_000124 si:dkeyp-75b4.10 coding upstream 2817 9994811 ~ 10000376 (+)
XLOC_000123 si:dkeyp-75b4.8 coding upstream 21079 9966384 ~ 9982114 (+)
XLOC_000122 pdia2 coding upstream 36998 9954489 ~ 9966195 (+)
XLOC_000121 NA coding upstream 51320 9946664 ~ 9951873 (+)
XLOC_000120 NA coding upstream 88563 9886955 ~ 9914630 (+)
XLOC_000126 fgb coding downstream 18650 10051763 ~ 10059496 (+)
XLOC_000127 si:ch73-132f6.5 coding downstream 41230 10074343 ~ 10124192 (+)
XLOC_000128 rbm46 coding downstream 94050 10127163 ~ 10137776 (+)
XLOC_000129 npy2rl coding downstream 188455 10221568 ~ 10235337 (+)
XLOC_000130 eif3f coding downstream 263914 10297027 ~ 10304044 (+)
XLOC_000116 BX323038.1 non-coding upstream 717842 9277846 ~ 9285351 (+)
XLOC_000111 NA non-coding upstream 870703 9129386 ~ 9132490 (+)
XLOC_000106 NA non-coding upstream 1026771 8967479 ~ 8976422 (+)
XLOC_000133 AL935188.1 non-coding downstream 330607 10363720 ~ 10363851 (+)
XLOC_000135 NA non-coding downstream 428931 10462044 ~ 10462882 (+)
XLOC_000136 NA non-coding downstream 584411 10617524 ~ 10617930 (+)
XLOC_000137 NA non-coding downstream 612151 10645264 ~ 10668028 (+)
XLOC_000138 NA non-coding downstream 612251 10645364 ~ 10680841 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016004 trim2 coding CM030132.1 CM030132.1 32857317 ~ 32876949 (-)