XLOC_000128 (rbm46)


Basic Information

Item Value
gene id XLOC_000128
gene name rbm46
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10127163 ~ 10137776 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000240
CTTGCAGCTCATTGGTTGAAAATCAAAAGTCACGTAAATAGTGCTTGTTTGACGTGATCAACAACATCACCTCATAGATCATCAAGTGTTGCCAAATTAATCCTGATTTTTTtcgtttcttatttatttttttaatttgccaAAAGgGATTATGGATGAACGCAGCAGTCAGCCGTCGGATAACAGTAGGATGGACAGCTCTAAAGAAGCTGCATTATTGGCCCTGATGGACAGGACAGGCTACAGCATGGTTCAGGAAAATGGTCAGAGAAAGTTTGGTGGTCCCCCTCCAGGCTGGGAGGGCCCTCCTCCTCCACGAGGTTGTGAGGTGTTTGTGGGTAAAATCCCGAGAGACATGTATGAAGATGAGCTGGTGCCTGTGTTTGAGCAAGCCGGTCACATCTACGAGTTTCGTCTGATGATGGAGTTCAGCGGAGAAAATCGTGGCTATGCCTTCGTCATGTACACCACCCGCGAGAAAGCCCAACGAGCCATTCAGCTCCTCGACAACTATGAAATCCGCCCTGGGAAGTTCATTGGAGTTTGTGTGAGTCTGGACAACTGTCGCCTTTTTATTGGCTCCATCCCAAAAGACAAGAAGAAGGAGGAGATCCAAGAAGAGATGATGAAGGTGACTGAAGGGGTCATGGATGTGATTGTGTATCCCAGCGCAGTGGACAGGATGAAGAATCGTGGCTTTGCCTTTGTTGAGTATGAATCCCACAAAGCAGCTGCCATGGCTCGCAGGAAACTAATACCAGGTACGTTTCAGTTGTGGGGTCACACCATCCAGGTTGACTGGGCCGAACCAGAAAAAGAATTAGACGAGGAAACCATGCAGCGAGTTCGAGTTCTTTATGTGCGGAATCTAATGCTGAGCACCACGGAGGAGACGCTTCGCTCTGAGTTCTCACAGCTGAAGCCTGGCTCTGTGGAACGTGTTAAGAAGCTGACGGATTATGCCTTCATCCACTTTTATAACCGCGAGGATGCCCTAACCGCTCTTGAGTCCATGAATGGGAAAGTTATTGATGGTTCGCCTATTGAGGTAACTCTTGCCAAGCCTGCTAGCAAAGATGGAAACAAAAGATTTGGACCGCGGAATTGCCACAATGGAGTGACCGCTGCTGGAGGCTACGGTGATTCCAACTTCTTGTTCCAGACCAGAAATGACATGACCATCGGAGCTATGGGCAATGGGTTAAACGCACACGCTCTCAGCCTGCCATATGCAGTGGACTTAGATCGCTGTGTGTATCCCTTCTTACCTGGGTCCACTTTGGTCCCAGTCAGCCTAAACACCGTTAAGCCCAGTCAGCTGAGCTCAGCTGTATCATTGCTGGATTACTACTGCCACAAGAATGACTGGTCTCTGCCGGAGTATCACCTCTACTCCCTTGCCGGACAGGAGGGCAAAGTAATGCTAATCTATAAAGTGGTCATCAGCAGCACCAGACGAAGCTTCATGCCTGATAAAGTCTGCACTATACTCGAGGATGCCAAGGAGCTTGCAGCTCAGAACGCACTCTGGAACTTAGATTGCTCCTCTGGCTCCTCATTGAATGTTTCTCCTCCTGCACCTTCTGGCTCTGGGTTCCTGTCCTTTGGCTGCAGGTCTCTGCCCTACCCAGCGTACCCCATGGCCTCAATCTCACCCCCCCTGCCCATCTCCTGCTCCTCTGCCCAGAGACTCTTCATCCCCAACCAGTCTTCATTCCTTTAGTCAAGAAGTTACTTTACTTACAGCGTGTTTCTTAACGTTCATATGAGTCGTTTTAATTGTTTCACAGACTGTTTCTGATTTAATGCTGTTTCAGTAGAATAACGTTTCCTCTGTTGCGCTAACTTACTTCAAGCCAGGGTTGTTGTTTCTTTACCAGAGTATTTTAAGGATTCTGTTTGAGCATTTATTTCGCTTTTTAATTCTTAAGAAGTAAGTTATTTACTCGCATTAGAAACAGTGTTTGAATGGAAACAACAAATATAAACTGTAACACTGCTAAAATGGCCAACCACTGGATCGTCTTTATGCAGTTGTGTAACATTTCTCTGGCAGATTAAATCTTCATAATTTAAGTT
>TCONS_00000241
gGATTATGGATGAACGCAGCAGTCAGCCGTCGGATAACAGTAGGATGGACAGCTCTAAAGAAGCTGCATTATTGGCCCTGATGGACAGGACAGGCTACAGCATGGTTCAGGAAAATGGTCAGAGAAAGTTTGGTGGTCCCCCTCCAGGCTGGGAGGGCCCTCCTCCTCCACGAGGTTGTGAGGTGTTTGTGGGTAAAATCCCGAGAGACATGTATGAAGATGAGCTGGTGCCTGTGTTTGAGCAAGCCGGTCACATCTACGAGTTTCGTCTGATGATGGAGTTCAGCGGAGAAAATCGTGGCTATGCCTTCGTCATGTACACCACCCGCGAGAAAGCCCAACGAGCCATTCAGCTCCTCGACAACTATGAAATCCGCCCTGGGAAGTTCATTGGAGTTTGTGTGAGTCTGGACAACTGTCGCCTTTTTATTGGCTCCATCCCAAAAGACAAGAAGAAGGAGGAGATCCAAGAAGAGATGATGAAGGTGACTGAAGGGGTCATGGATGTGATTGTGTATCCCAGCGCAGTGGACAGGATGAAGAATCGTGGCTTTGCCTTTGTTGAGTATGAATCCCACAAAGCAGCTGCCATGGCTCGCAGGAAACTAATACCAGGTACGTTTCAGTTGTGGGGTCACACCATCCAGGTTGACTGGGCCGAACCAGAAAAAGAATTAGACGAGGAAACCATGCAGCGAGTTCGAGTTCTTTATGTGCGGAATCTAATGCTGAGCACCACGGAGGAGACGCTTCGCTCTGAGTTCTCACAGCTGAAGCCTGGCTCTGTGGAACGTGTTAAGAAGCTGACGGATTATGCCTTCATCCACTTTTATAACCGCGAGGATGCCCTAACCGCTCTTGAGTCCATGAATGGGAAAGTTATTGATGGTTCGCCTATTGAGGTAACTCTTGCCAAGCCTGCTAGCAAAGATGGAAACAAAAGATTTGGACCGCGGAATTGCCACAATGGAGTGACCGCTGCTGGAGGCTACGGTGATTCCAACTTCTTGTTCCAGACCAGAAATGACATGACCATCGGAGCTATGGGCAATGGGTTAAACGCACACGCTCTCAGCCTGCCATATGCAGTGGACTTAGATCGCTGTGTGTATCCCTTCTTACCTGGGTCCACTTTGGTCCCAGTCAGCCTAAACACCGTTAAGCCCAGTCAGCTGAGCTCAGCTGTATCATTGCTGGATTACTACTGCCACAAGAATGACTGGTCTCTGCCGGAGTATCACCTCTACTCCCTTGCCGGACAGGAGGGCAAAGTAATGCTAATCTATAAAGTGGTCATCAGCAGCACCAGACGAAGCTTCATGCCTGATAAAGTCTGCACTATACTCGAGGATGCCAAGGAGCTTGCAGCTCAGAACGCACTCTGGAACTTAGATTGCTCCTCTGGCTCCTCATTGAATGTTTCTCCTCCTGCACCTTCTGGCTCTGGGTTCCTGTCCTTTGGCTGCAGGTCTCTGCCCTACCCAGCGTACCCCATGGCCTCAATCTCACCCCCCCTGCCCATCTCCTGCTCCTCTGCCCAGAGACTCTTCATCCCCAACCAGTCTTCATTCCTTTAGTCAAGAAGTTACTTTACTTACAGCGTGTTTCTTAACGTTCATATGAGTCGTTTTAATTGTTTCACAGACTGTTTCTGATTTAATGCTGTTTCAGTAGAATAACGTTTCCTCTGTTGCGCTAACTTACTTCAAGCCAGGGTTGTTGTTTCTTTACCAGAGTATTTTAAGGATTCTGTTTGAGCATTTATTTCGCTTTTTAATTCTTAAGAAGTAAGTTATTTACTCGCATTAGAAACAGTGTTTGAATGGAAACAACAAATATAAACTGTAACACTGCTAAAATGGCCAACCACTGGATCGTCTTTATGCAGTTGTGTAACATTTCTCTGGCAGATTAAATCTTCATAATTTAAGTTAGAtggttttgcttttttgttgttgttgagcaTTTGCCCTTGACTTGAATACCtacaactagggctgcacaatatatcgtttcagcatcgaaatcgcaatgtgcgcatctgcaatagtcacattgcaaaggTATGCAGAGtgcagtctgaattatagttgaccaggagctacagaattatATTTAATCACggaatcactgtatttatatggacgtcatatgatttatgcaaaaaaaaacattttttacttagattttttgtattgtttctagtccaaatatctaatttCATAGCAAAAACAAGAATATttcacttaccccactg

Function

symbol description
rbm46 Predicted to enable mRNA binding activity. Predicted to be active in nucleus. Orthologous to human RBM46 (RNA binding motif protein 46).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-061013-298 Predicted to enable mRNA binding activity. Predicted to be active in nucleus. Orthologous to human RBM46 (RNA binding motif protein 46).

Ensembl:

ensembl_id ENSDARG00000079452

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000240 False 2079 mRNA 0.47 6 10127163 10137452
TCONS_00000241 True 2257 mRNA 0.46 5 10129099 10137776

Neighbor

gene id symbol gene type direction distance location
XLOC_000127 si:ch73-132f6.5 coding upstream 2971 10074343 ~ 10124192 (+)
XLOC_000126 fgb coding upstream 67667 10051763 ~ 10059496 (+)
XLOC_000125 trim2b coding upstream 94050 10003193 ~ 10033113 (+)
XLOC_000124 si:dkeyp-75b4.10 coding upstream 126787 9994811 ~ 10000376 (+)
XLOC_000123 si:dkeyp-75b4.8 coding upstream 145049 9966384 ~ 9982114 (+)
XLOC_000129 npy2rl coding downstream 83792 10221568 ~ 10235337 (+)
XLOC_000130 eif3f coding downstream 159251 10297027 ~ 10304044 (+)
XLOC_000131 zgc:77880 coding downstream 167835 10305611 ~ 10315206 (+)
XLOC_000132 pip4p1b coding downstream 180301 10318077 ~ 10325025 (+)
XLOC_000133 AL935188.1 coding downstream 225944 10363720 ~ 10363851 (+)
XLOC_000121 NA non-coding upstream 175290 9946664 ~ 9951873 (+)
XLOC_000120 NA non-coding upstream 212533 9886955 ~ 9914630 (+)
XLOC_000116 BX323038.1 non-coding upstream 841812 9277846 ~ 9285351 (+)
XLOC_000111 NA non-coding upstream 994673 9129386 ~ 9132490 (+)
XLOC_000106 NA non-coding upstream 1150741 8967479 ~ 8976422 (+)
XLOC_000135 NA non-coding downstream 324268 10462044 ~ 10462882 (+)
XLOC_000136 NA non-coding downstream 479748 10617524 ~ 10617930 (+)
XLOC_000137 NA non-coding downstream 507488 10645264 ~ 10668028 (+)
XLOC_000138 NA non-coding downstream 507588 10645364 ~ 10680841 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015988 NA coding CM030132.1 CM030132.1 32576870 ~ 32577223 (+)