CI01000299_05512316_05521322


Basic Information

Item Value
gene id CI01000299_05512316_05521322
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5512051 ~ 5521322 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_05512316_05521322.mRNA
GTGTGCGTCTGCTGCGGCTTGCCATGTCATCACAGCTGGACGTGTCGCTGAGGGTCAGAGGTCAGGCGGCGGCCAGCAGCAGGACCGCGGTCAGTGGGCGAGCAAAGCTGAATTCCTGCTGGCTGTTGCTGGACAGATTATCGGTCTGGGTAACGTGTGGCGATTCCCATATCTGTGCTACAAGAACGGAGGAGGTGTGTTCTTTGTGCCGTACATGTTATTCCTGGTTGTGTGTGGTGTTCCGCTCTTCCTGCTGGAGACGGCGCTGGGTCAGTTCACCAGTCTGGGAGGAGTCGGCGCATGGAGGAAAATCTGCCCACTTTTTGCAGGTCTGGGTTATGCCAGTCAGGTGATGATCTTACACAGTTGTGTGTATTTCATCATTATTCTGGCCTGGGCGCTTTTCTACCTGTGTAGCAGCTTCCAGACGCCACTTCCCTGGGCGCACTGCAACAACACCTGGAACACAGATTCCTGCGTGGGCTTTGAGCGACACAACATCAGCGAAGTCTCTGAAAATGCCACGTCTCCAGTCATTGAGTTTTGGGAGCGTGAGGTGTTGGATCTGTCTGCGAGTGTAGATCATCTGGGCTCGGTGAACCTCCGTCTGGCCTTCTGTCTGCTGCTGGTGTGGGTCGTCTGCTACTTCTGTGTCTGGAAAGGAGTCAAATCCACCGGCAAGGTTGTGTATGTCACAGCCACCTTCCCTTACGTGATGCTGCTGGTGTTGTTAATTCGTGGGGTGACGCTCCCCGGTGCCGTGGACGGGATTATTTATTACCTGAAACCCAATCACACACGGCTGACAGACCCACAGGTATGGATGGATGCAGGGACTCAGATCTTCTTCTCATATGGCATTGGTCTGGGAAGTCTCACAGCTCTGGGCAGCTACAATAAATTCAACAACGACTGTTACAAGGACTGTTTCAGACTGTGCCTCCTCAACAGTGGCACCAGTTTCGTGGCAGGATTCGCCATTTTCTCGGTGCTCGGCTTCATGGCGCAGGAGCAGGGTGTGGATATCGCAGACGTGGCGCAGTCAGGTCCTGGTCTAGCGTTCATAGCGTATCCGCGGGCCGTTTCCATGATGCCTGTGCCGCAGCTGTGGGCCGTGTGTTTCTTCCTCATGATCATCATGTTGGGTCTGGACACTCAGGTGTGGCGTCGCTCTCAGTTTGTCAGTCTCGAGGCGCTGATGATGTCGTTGTCAGATCGGTACCCCGCAGTCGTCCGTAAAGGTCGCCGGCGTGAGATTCTGCTCCTGCTTGTGTGTTCAGTGTGTTTCCTGCTCGGGCTTCTGATGGTGACGCCGAGCAGTGTAGCGTCTGAATCACATATCGCTGTCTTCCTCTCTGTGTCTGATGATCAGGGAGGCCTGTATGTGTTTCAGATCTACGATCATTTCTCCTGCAGTGGAGCCAGTCTGCTGCTGCTGTCCGTCTGTCAGTCGGTGGCTATCGGATGGATCTATGGTGCTGAGCGTTTCAGCAGTGACATCGAGGCCATGATCGGTTACCAGCCGCTCGGCAGCTTCAGGCTGTGCTGGCGTTACCTGACGCCCGCCGTGTGCATTGGCACGTTCGTGTTCTCGCTGATGTGTTGGTCTCCGCTGACCCTTGCCAACGGCTTGACTGCCCCTGGATGGGCCACGGTGATGGGCTGGACGCTGACGCTGTCCTCCGTGTCTCTTCTGCCGGTCTGCGCGCTCTACACCCTCATGAACACACTGGGAAACTTTCGACAGGCCATTCATGTGTTCCCGTGTGCAGCGTCTCCGCCTGCTGTGCCGCCCCGCGCTGGACTCATGCTGACAGACGAGCACCTTTCTAATGCTGCGTGCTTGACCTTTGACCTCAGCACAAAGAAGCCCAAAGAGCCAATTAAGGACGTGGTGTAATCGAGTGAAACTGAACAGATCTGATGTAAAGAAACCAGCGTGAAACAGCTGGAAGGTAAAAGAAACTCTGTGTTTCCATAAAAAGCTTCTCTTCATGTTCTTCTTCTGTGTTACGTTTACATCTGTCAAAATCCTTGATCTTCCATTTCCAGTGTGAATGAACCAGTTTTCATAGTCTTCTTCTTGACTCAGACTGCAGAAAGATGAATAGATGTAATTTTCTGAATAACACATCAATAGTAATGTGTAGTAGCATGTTATTAAA

Function

NR:

description
Sodium- and chloride-dependent GABA transporter 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_05512316_05521322.mRNA True 2165 mRNA 0.53 14 5512051 5521322

Neighbor

gene id symbol gene type direction distance location
CI01000299_05478688_05502027 ADAMTS5 coding downstream 8783 5477482 ~ 5503268 (-)
CI01000299_05466693_05471714 ADAMTS1 coding downstream 40064 5465642 ~ 5471987 (-)
CI01000299_05457285_05462908 NA coding downstream 48560 5456864 ~ 5463491 (-)
CI01000299_05428160_05443433 APP, APPA coding downstream 68618 5427661 ~ 5443433 (-)
CI01000299_05419449_05423414 ATP5J coding downstream 88637 5419403 ~ 5423414 (-)
CI01000299_05602070_05604608 NA coding upstream 80661 5601983 ~ 5604615 (-)
CI01000299_05739937_05770480 MRPL39 coding upstream 218486 5739808 ~ 5770807 (-)
CI01000299_05802706_05815472 MRPL16 coding upstream 281182 5802504 ~ 5815472 (-)
CI01000299_05818562_05822413 NA coding upstream 297084 5818406 ~ 5823867 (-)
CI01000299_05826769_05831144 NA coding upstream 304644 5825966 ~ 5831312 (-)
G407669 NA non-coding downstream 93680 5413334 ~ 5418371 (-)
G407591 NA non-coding downstream 329689 5085394 ~ 5182362 (-)
G407565 NA non-coding downstream 515142 4957987 ~ 4996909 (-)
G407564 NA non-coding downstream 555686 4956098 ~ 4956365 (-)
G407734 NA non-coding upstream 31306 5552628 ~ 5554845 (-)
G407764 NA non-coding upstream 113518 5634840 ~ 5639866 (-)
G407848 NA non-coding upstream 252927 5774249 ~ 5775541 (-)
CI01000299_05896205_05898855 NA non-coding upstream 300253 5896043 ~ 5898857 (-)
G407858 NA non-coding upstream 408317 5929639 ~ 5930546 (-)
CI01000299_04913779_04927715 NA other downstream 583233 4913373 ~ 4927715 (-)
G407413 NA other downstream 961330 4475994 ~ 4550721 (-)
G405053 NA other downstream 3494001 2017687 ~ 2018050 (-)
G407805 NA other upstream 306514 5835889 ~ 5835989 (-)
CI01000299_06526127_06532048 CEP97 other upstream 1010679 6526127 ~ 6532048 (-)

Expression


Co-expression Network